Cell atlas - SECTM1 - The Human Protein Atlas

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SECTM1

TISSUE

CELL

CANCER

CELL ATLAS RNA EXPRESSION

GENE/PROTEIN

Dictionary

Human cell

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GENERAL INFORMATION
Gene name	SECTM1
Gene description	Secreted and transmembrane 1
Protein class	Predicted membrane proteins Predicted secreted proteins
Predicted localization	Membrane,Secreted
Number of transcripts	7
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION
Summary
RNA cell category	Cell line enhanced (SiHa, U-2197)
Protein evidence	Evidence at protein level
Main location	Not available

DATA RELIABILITY
Reliability score	Pending cell analysis.

ASSAYS

RNA EXPRESSION OVERVIEW
RNA cell line category: Cell line enhanced (SiHa, U-2197) Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

GENE INFORMATION
Gene name	SECTM1 (HGNC Symbol)
Synonyms	K12
Description	Secreted and transmembrane 1 (HGNC Symbol)
Entrez gene summary	This gene encodes a transmembrane and secreted protein with characteristics of a type 1a transmembrane protein. It is found in a perinuclear Golgi-like pattern and thought to be involved in hematopoietic and/or immune system processes. [provided by RefSeq, Jul 2008]
Chromosome	17
Cytoband	q25.3
Chromosome location (bp)	82321024 - 82334074
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000141574 (version 83.38)
Entrez gene	6398
UniProt	Q8WVN6 (UniProt - Evidence at protein level)
neXtProt	NX_Q8WVN6
Antibodypedia	SECTM1 antibodies

PROTEIN BROWSER

SECTM1-001	SECTM1-002	SECTM1-003	SECTM1-004	SECTM1-005	SECTM1-006	SECTM1-008

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
SECTM1-001 ENSP00000269389 ENST00000269389	Q8WVN6 [Direct mapping] Secreted and transmembrane protein 1 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0004871 [signal transducer activity] GO:0005125 [cytokine activity] GO:0005615 [extracellular space] GO:0005794 [Golgi apparatus] GO:0005886 [plasma membrane] GO:0006955 [immune response] GO:0007165 [signal transduction] GO:0007498 [mesoderm development] GO:0016021 [integral component of membrane] GO:0043123 [positive regulation of I-kappaB kinase/NF-kappaB signaling] GO:0070062 [extracellular exosome] Show all	248 aa 27 kDa	Yes	1
SECTM1-002 ENSP00000463114 ENST00000581691	J3KTR4 [Direct mapping] Secreted and transmembrane protein 1 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] GO:0016021 [integral component of membrane] Show all	178 aa 19.5 kDa	Yes	1
SECTM1-003 ENSP00000463120 ENST00000582563	J3QKK2 [Direct mapping] Secreted and transmembrane protein 1 Show all	MEMSAT3 predicted membrane proteins Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	170 aa 18.3 kDa	Yes	0
SECTM1-004 ENSP00000462294 ENST00000582290	J3KS40 [Direct mapping] Secreted and transmembrane protein 1 Show all	MEMSAT3 predicted membrane proteins Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Protein evidence (Ezkurdia et al 2014) Show all		85 aa 9 kDa	Yes	0
SECTM1-005 ENSP00000462563 ENST00000583093	J3KSN0 [Direct mapping] Secreted and transmembrane protein 1 Show all	MEMSAT3 predicted membrane proteins Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	147 aa 16 kDa	Yes	0
SECTM1-006 ENSP00000463904 ENST00000580437	J3QQU6 [Direct mapping] Secreted and transmembrane protein 1 Show all	MEMSAT3 predicted membrane proteins Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	149 aa 15.9 kDa	Yes	0
SECTM1-008 ENSP00000464385 ENST00000581954	J3QRU5 [Direct mapping] Secreted and transmembrane protein 1 Show all	Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Protein evidence (Ezkurdia et al 2014) Show all		44 aa 4.5 kDa	Yes	0

Contact

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.