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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA052625

 

Antibody CAB004300

 

Antibody CAB004674

 

Provider

Atlas Antibodies
Sigma-Aldrich
  University of Gothenburg
  Abnova
 

Product name

HPA052625   NF1-C2   H00004782-M01  

Host species

Rabbit   Rabbit   Mouse  

Clonality

pAb   msAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Not known   Protein A/G  

Other gene match

     

Released in version

12   2   2  

References

     

VALIDATION SUMMARY

 
 

Antibody HPA052625

 

Antibody CAB004300

 

Antibody CAB004674

 
Immunocytochemistry

Supported      
Immunohistochemistry


Validated
 

Validated
 

Validated
 
Western blot

Uncertain   Uncertain   Supported  
Protein array

Supported      

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA052625

 

Antibody CAB004300

 

Antibody CAB004674

 

Standard validation

Supported      

     

Figure description

Immunofluorescent staining of human cell line MCF7 shows localization to nucleus & nucleoli fibrillar center.      

Antibody dilution

1:80      

Literature conformity

The subcellular location is supported by literature.      

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA052625

 

Antibody CAB004300

 

Antibody CAB004674

 

Formal validation: Orthogonal

Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 

 

 

 
 

 

 
 

 

 

Figure description

Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.  
 

Standard validation

Supported   Supported   Supported  

     

Figure description

Immunohistochemical staining of human stomach, upper shows strong nuclear positivity in glandular cells.   Immunohistochemical staining of human adrenal gland shows moderate nuclear positivity in cortical cells.   Immunohistochemical staining of human pancreas shows strong nuclear positivity in exocrine glandular cells.  

Expression

RNA: detected in 37 tissues
Protein: detected in 68 cell types
  RNA: detected in 37 tissues
Protein: detected in 49 cell types
  RNA: detected in 37 tissues
Protein: detected in 58 cell types
 

Retrieval

HIER pH6   HIER pH6   HIER pH6  

Antibody dilution

1:300   1:1000   1:200  

Literature conformity

Consistent with extensive gene/protein characterization data.   Partly consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

Consistent with RNA expression data.   Mainly consistent with RNA expression data.   Consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA052625

 

Antibody CAB004300

 

Antibody CAB004674

 

Standard validation

Uncertain

Analysis performed using a standard panel of samples.
Single band differing more than +/-20% from predicted size in kDa and not supported by experimental and/or bioinformatic data.
  Uncertain

Analysis performed using a standard panel of samples.
Weak band of predicted size but with additional bands of higher intensity also present.
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
 

     

Figure description

Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
    Lane 1: Marker [kDa] 230, 110, 82, 49.3, 32.2, 25.5, 17.6
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: A-431
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

55.7, 54.7, 48.9, 47.9, 47.6, 45.4   55.7, 54.7, 48.9, 47.9, 47.6, 45.4   55.7, 54.7, 48.9, 47.9, 47.6, 45.4  

Antibody dilution

1:400   1:500   1:500  

PROTEIN ARRAY

 
 

Antibody HPA052625

 

Antibody CAB004300

 

Antibody CAB004674

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
     

     

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.      

Antibody dilution

1:3200      

ANTIGEN INFORMATION

 
 

Antibody HPA052625

 

Antibody CAB004300

 

Antibody CAB004674

 

Antigen

Recombinant protein fragment   Synthetic peptide   Recombinant protein  

Length (aa)

71      

Antigen sequence

RTLPSTSSSGSKRHKSGSMEEDVDTSPGGDYYTSPSSPTSSSRNWTEDME
GGISSPVKKTEMDKSPFNSPS
     

Matching transcripts

NFIC-001 - ENSP00000465655 [100%]
NFIC-003 - ENSP00000378543 [100%]
NFIC-004 - ENSP00000342194 [100%]
NFIC-005 - ENSP00000466647 [100%]
NFIC-006 - ENSP00000396843 [100%]
NFIC-011 - ENSP00000465177 [100%]
     

Other gene match

     
ANTIGEN VIEW
NFIC-001
NFIC-003
NFIC-004
NFIC-005
NFIC-006
NFIC-011
 

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.