Cell atlas - CCDC97 - The Human Protein Atlas

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CCDC97

TISSUE

CELL

CANCER

CELL ATLAS RNA EXPRESSION HUMAN CELLS

GENE/PROTEIN

Antibody validation

Dictionary
	Cytosol
	Nucleoplasm
	Plasma membrane

Human cell
	Cytosol
	Nucleoplasm
	Plasma Membrane

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GENERAL INFORMATION
Gene name	CCDC97
Gene description	Coiled-coil domain containing 97
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	3
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HUMAN PROTEIN ATLAS INFORMATION
Summary	Mainly localized to the nucleoplasm. In addition localized to the plasma membrane & cytosol.
RNA cell category	Expressed in all
Protein evidence	Evidence at protein level
Main location	Localized to the Nucleoplasm (supported)
Additional location	In addition localized to the Plasma membrane (approved), Cytosol (approved)

DATA RELIABILITY
Reliability score	Supported based on 2 antibodies. HPA043320 , HPA043572
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ASSAYS

RNA expression

Human cells

RNA EXPRESSION OVERVIEW
RNA cell line category: Expressed in all Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

HUMAN CELLS

Summary

Mainly localized to the nucleoplasm. In addition localized to the plasma membrane & cytosol.

Main location

Nucleoplasm (supported)

Additional location

Plasma membrane (approved), Cytosol (approved)


	Toggle channels	Low High G1 S G2 M N/A

Antibody	Cell line	Location
HPA043320	A-431	Nucleoplasm
		Plasma membrane
		Cytosol
HPA043320	U-2 OS	Nucleoplasm
		Plasma membrane
		Cytosol
HPA043320	U-251 MG	Nucleoplasm
		Plasma membrane
		Cytosol
HPA043572	A-431	Nucleoplasm
HPA043572	U-2 OS	Nucleoplasm
HPA043572	U-251 MG	Nucleoplasm

GENE INFORMATION
Gene name	CCDC97 (HGNC Symbol)
Synonyms	FLJ40267, MGC20255
Description	Coiled-coil domain containing 97 (HGNC Symbol)
Entrez gene summary
Chromosome	19
Cytoband	q13.2
Chromosome location (bp)	41310189 - 41324883
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000142039 (version 83.38)
Entrez gene	90324
UniProt	Q96F63 (UniProt - Evidence at protein level)
neXtProt	NX_Q96F63
Antibodypedia	CCDC97 antibodies

PROTEIN BROWSER

CCDC97-001	CCDC97-002	CCDC97-003

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
CCDC97-001 ENSP00000269967 ENST00000269967	Q96F63 [Direct mapping] Coiled-coil domain-containing protein 97 Show all	Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005686 [U2 snRNP] Show all	343 aa 38.9 kDa	No	0
CCDC97-002 ENSP00000470858 ENST00000596882	M0QZY6 [Direct mapping] Coiled-coil domain-containing protein 97 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005686 [U2 snRNP] Show all	16 aa 1.7 kDa	No	0
CCDC97-003 ENSP00000469348 ENST00000600918	M0QXS4 [Direct mapping] Coiled-coil domain-containing protein 97 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005686 [U2 snRNP] Show all	154 aa 17.5 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.