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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:76.8TPM
GTEx:23.7RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glial cells:Not detected
Neuronal cells:Not detected
Neuropil:Low
 

Antibody staining

Antibody HPA031314

 

Endothelial cells

Low  

Glial cells

Not detected  

Neuronal cells

Not detected  

Neuropil

Low  
 
 
 

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

76.8

N/A Male, age 5
Sample 1
TPM: 60.2
overview Female, age 40
Sample 2
TPM: 75.0
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 95.3
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

23.7

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 23.4
Samples: 114

Max RPKM: 52.2
Min RPKM: 13.6
Std RPKM: 4.9
Median RPKM: 23.2
GTEX-144FL-3026-SM-5O99C 52.2
GTEX-13NYS-3126-SM-5KLYV 44.0
GTEX-139T8-1026-SM-5J2MC 39.0
GTEX-NPJ8-1526-SM-2D7VU 32.1
GTEX-13FHO-3026-SM-5J1O9 31.3
GTEX-X585-3026-SM-46MWF 29.5
GTEX-132Q8-3026-SM-5PNVG 29.0
GTEX-11DXY-3226-SM-5GIDE 28.5
GTEX-WHSE-3026-SM-3P5ZH 28.1
GTEX-13NYC-2826-SM-5K7WR 27.6
GTEX-11WQK-3026-SM-5EQL6 27.4
GTEX-NPJ7-2726-SM-2I3FT 27.3
GTEX-1192X-3126-SM-5N9BY 26.5
GTEX-11GSO-2926-SM-5HL73 26.4
GTEX-QMR6-1426-SM-32PLA 26.4
GTEX-13OW8-2826-SM-5L3GC 26.1
GTEX-13SLX-3126-SM-5S2Q5 26.1
GTEX-13FXS-3126-SM-5J2NN 26.0
GTEX-11OC5-0726-SM-5P9JK 25.9
GTEX-QVUS-2826-SM-3GADB 25.8
GTEX-WL46-2926-SM-3LK82 25.6
GTEX-13OW6-3026-SM-5J2MI 25.5
GTEX-13JUV-2926-SM-5LZX7 25.4
GTEX-YFC4-3126-SM-5PNV6 25.4
GTEX-WWYW-3126-SM-3NB39 25.3
GTEX-13OVH-3026-SM-5MR4N 25.2
GTEX-13VXU-2926-SM-5LU5C 25.2
GTEX-ZUA1-3026-SM-59HJC 25.1
GTEX-ZZPT-3026-SM-5GZXH 25.1
GTEX-12ZZY-3026-SM-5GCOU 25.0
GTEX-QVJO-1426-SM-2S1QY 25.0
GTEX-ZYFD-3026-SM-5E44C 24.9
GTEX-XLM4-3026-SM-4AT6L 24.8
GTEX-12WSC-3026-SM-5GCNF 24.7
GTEX-T6MN-2626-SM-32PMQ 24.7
GTEX-TSE9-3026-SM-3DB76 24.7
GTEX-14BMV-3026-SM-5S2PQ 24.6
GTEX-T2IS-3026-SM-32QPM 24.6
GTEX-145MF-2726-SM-5O995 24.5
GTEX-14ASI-3026-SM-5S2PN 24.5
GTEX-WVLH-3026-SM-3MJG9 24.4
GTEX-T5JC-2426-SM-3NMDB 24.3
GTEX-145LS-3126-SM-5Q5BY 24.1
GTEX-OXRN-2426-SM-2I5EQ 24.0
GTEX-ZAJG-3126-SM-5HL9J 24.0
GTEX-14A5I-2926-SM-5Q5CQ 23.9
GTEX-R55F-1326-SM-5S2V4 23.9
GTEX-11PRG-2926-SM-5987A 23.8
GTEX-13FLW-1426-SM-5K7YE 23.8
GTEX-117XS-3026-SM-5N9CA 23.7
GTEX-1313W-3126-SM-5LZUI 23.7
GTEX-WZTO-2926-SM-3NM9I 23.6
GTEX-13IVO-2926-SM-5L3CZ 23.5
GTEX-145MH-3026-SM-5Q5DZ 23.5
GTEX-X4XX-3026-SM-3NMB2 23.4
GTEX-11ONC-2926-SM-5P9JM 23.3
GTEX-12ZZX-2926-SM-5GCOQ 23.2
GTEX-13OVJ-2826-SM-5L3GW 23.2
GTEX-QDT8-2926-SM-32PKC 23.2
GTEX-13O3O-3126-SM-5KM3H 23.1
GTEX-1117F-3226-SM-5N9CT 23.0
GTEX-144GL-3026-SM-5Q5CW 23.0
GTEX-13O3Q-2926-SM-5KM45 22.9
GTEX-145MG-3026-SM-5RQJA 22.9
GTEX-11ZUS-2926-SM-5FQSL 22.7
GTEX-UTHO-3026-SM-3GAFB 22.7
GTEX-ZAK1-3026-SM-5S2MJ 22.7
GTEX-PWO3-0926-SM-2I5EY 22.6
GTEX-13NYB-3026-SM-5IJD7 22.5
GTEX-XOTO-3026-SM-4B65M 22.5
GTEX-RNOR-2326-SM-2TF4I 22.2
GTEX-Y111-2726-SM-4TT3N 21.9
GTEX-13FHP-3026-SM-5IJBS 21.7
GTEX-111FC-3126-SM-5GZZ2 21.6
GTEX-11NUK-2926-SM-5A5MD 21.6
GTEX-12126-1026-SM-5P9JJ 21.6
GTEX-1128S-2726-SM-5H12C 21.5
GTEX-Q2AG-2926-SM-2HMJ3 21.5
GTEX-12ZZW-2926-SM-5LZUP 21.4
GTEX-ZVT3-3026-SM-5E43N 21.3
GTEX-YJ89-3026-SM-5IFJI 21.2
GTEX-11GS4-3126-SM-5A5LH 21.1
GTEX-11O72-2926-SM-5BC4V 20.8
GTEX-13G51-3026-SM-5IJB8 20.8
GTEX-11TTK-2926-SM-5PNYP 20.6
GTEX-Y8DK-0826-SM-4TT3T 20.6
GTEX-PVOW-2526-SM-2XCF7 20.3
GTEX-Z93S-2926-SM-57WB9 20.3
GTEX-11DXW-1126-SM-5H12Q 20.2
GTEX-RU72-3026-SM-5SI7Y 20.0
GTEX-13QIC-2926-SM-5J2NF 19.9
GTEX-131YS-3126-SM-5KLYT 19.7
GTEX-12ZZZ-3026-SM-5BC67 19.6
GTEX-1399T-3026-SM-5KLZC 19.6
GTEX-N7MT-1126-SM-5SI7V 19.5
GTEX-11EI6-3026-SM-5GZZO 19.2
GTEX-13JVG-3126-SM-5L3FH 19.1
GTEX-13PVQ-3026-SM-5SI93 19.0
GTEX-131XW-3126-SM-5LZUC 18.9
GTEX-ZE7O-3126-SM-5HL5X 18.9
GTEX-11EMC-3226-SM-5EGKW 18.8
GTEX-13S7M-3126-SM-5RQJQ 18.8
GTEX-12WSD-3126-SM-5HL7P 18.6
GTEX-11OF3-2926-SM-5HL78 18.5
GTEX-12WSA-2926-SM-5EQ4D 18.5
GTEX-13X6K-2926-SM-5Q5D5 18.5
GTEX-1445S-3026-SM-5O9BR 17.9
GTEX-13X6J-3026-SM-5Q5CU 17.7
GTEX-12WSH-3026-SM-5CVNI 17.1
GTEX-13PL6-3126-SM-5LUAR 16.7
GTEX-13OW7-3026-SM-5L3GY 16.6
GTEX-11GSP-3226-SM-5986O 15.9
GTEX-147GR-3026-SM-5S2ML 14.2
GTEX-11NV4-2126-SM-5N9DS 13.6
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 24.1
Samples: 108

Max RPKM: 77.2
Min RPKM: 11.5
Std RPKM: 7.8
Median RPKM: 23.9
GTEX-13N2G-0011-R10a-SM-5MR34 77.2
GTEX-X4EP-0011-R10B-SM-4QASJ 50.1
GTEX-13NYS-0011-R10a-SM-5MR4S 41.2
GTEX-132Q8-0011-R10b-SM-5DUWZ 35.5
GTEX-NPJ8-0011-R10A-SM-2YUMO 34.0
GTEX-NPJ7-0011-R10A-SM-2I3E5 33.5
GTEX-13QJC-0011-R10a-SM-5SI63 31.6
GTEX-X585-0011-R10A-SM-46MUY 31.3
GTEX-13X6I-0011-R10a-SM-5PNWI 31.0
GTEX-T6MN-0011-R10A-SM-32QP7 30.8
GTEX-11H98-0011-R10b-SM-5NQ98 30.5
GTEX-13X6K-0011-R10a-SM-5P9JR 30.2
GTEX-13FHO-0011-R10b-SM-5J2MM 30.0
GTEX-QVJO-0011-R10A-SM-2S1QJ 29.7
GTEX-13CZV-0011-R10b-SM-5LZYD 29.6
GTEX-X261-0011-R10B-SM-4E3JT 29.4
GTEX-14ASI-0011-R10b-SM-5S2VZ 29.2
GTEX-13RTJ-0011-R10b-SM-5O9CW 28.9
GTEX-ZF28-0011-R10a-SM-4WWEH 28.5
GTEX-ZAB4-0011-R10a-SM-4SOKH 28.1
GTEX-X4XX-0011-R10B-SM-46MWO 27.7
GTEX-145MG-0011-R10a-SM-5PNWG 27.3
GTEX-XLM4-0011-R10A-SM-4AT5P 27.3
GTEX-14BIN-0011-R10a-SM-5S2UA 27.0
GTEX-N7MT-0011-R10A-SM-2I3E1 27.0
GTEX-QVUS-0011-R10A-SM-3GIK3 26.9
GTEX-WVLH-0011-R10A-SM-3MJFM 26.9
GTEX-13JUV-0011-R10b-SM-5LZXR 26.7
GTEX-12WSC-0011-R10a-SM-5GU57 26.6
GTEX-145MH-0011-R10b-SM-5PNUK 26.6
GTEX-WWYW-0011-R10A-SM-3NB35 26.4
GTEX-12WSF-0011-R10a-SM-5LZVH 26.2
GTEX-13FXS-0011-R10a-SM-5J2MA 26.2
GTEX-YFC4-0011-R10a-SM-4SOK5 26.0
GTEX-Y8DK-0011-R10A-SM-4SOK1 25.8
GTEX-13O3Q-0011-R10b-SM-5KM39 25.7
GTEX-S7SE-0011-R10A-SM-2XCDF 25.7
GTEX-12WSE-0011-R10b-SM-5P9JV 25.3
GTEX-13O3O-0011-R10a-SM-5LUA9 25.1
GTEX-13OVL-0011-R10a-SM-5L3GS 25.1
GTEX-13QIC-0011-R10a-SM-5O9C7 25.0
GTEX-NL3H-0011-R10A-SM-2I3E9 24.7
GTEX-13S7M-0011-R10b-SM-5PNZB 24.6
GTEX-14BIL-0011-R10a-SM-5SI75 24.6
GTEX-Q2AG-0011-R10A-SM-2HMLA 24.6
GTEX-147GR-0011-R10b-SM-5S2UM 24.5
GTEX-1313W-0011-R10b-SM-5DUXA 24.4
GTEX-13SLX-0011-R10a-SM-5P9HV 24.4
GTEX-131YS-0011-R10b-SM-5EQ5N 24.2
GTEX-13SLW-0011-R10a-SM-5S2UI 24.2
GTEX-WZTO-0011-R10B-SM-4E3KB 24.1
GTEX-12WSM-0011-R10a-SM-5DUWV 24.0
GTEX-12ZZY-0011-R10b-SM-5HL7W 24.0
GTEX-12ZZZ-0011-R10a-SM-5P9HC 24.0
GTEX-145LS-0011-R10a-SM-5PNUQ 23.8
GTEX-QDT8-0011-R10A-SM-32PKG 23.8
GTEX-WL46-0011-R10A-SM-3MJFQ 23.7
GTEX-13OVJ-0011-R10b-SM-5L3HT 23.6
GTEX-N7MS-0011-R10A-SM-2HMJK 23.6
GTEX-12ZZX-0011-R10b-SM-5DUWK 23.5
GTEX-13OW7-0011-R10a-SM-5L3H3 23.5
GTEX-NL4W-0011-R10A-SM-2I3DY 23.3
GTEX-T5JC-0011-R10A-SM-32PM2 23.3
GTEX-13N1W-0011-R10b-SM-5MR4H 22.8
GTEX-12WSA-0011-R10b-SM-5P9ET 22.6
GTEX-13FLW-0011-R10b-SM-5LZZF 22.6
GTEX-ZVZQ-0011-R10b-SM-51MRT 22.6
GTEX-131XH-0011-R10a-SM-5EGLJ 22.5
GTEX-13X6J-0011-R10b-SM-5PNWA 22.3
GTEX-P44H-0011-R10A-SM-2XCEK 22.3
GTEX-13OW8-0011-R10a-SM-5L3H6 22.1
GTEX-XMD1-0011-R10A-SM-4AT4A 21.8
GTEX-RVPU-0011-R10A-SM-2XCAH 21.6
GTEX-YJ89-0011-R10a-SM-4SOK9 21.6
GTEX-OXRN-0011-R10A-SM-2I5GC 21.5
GTEX-11WQK-0011-R10a-SM-5BC6R 21.4
GTEX-QMR6-0011-R10A-SM-32PKO 21.2
GTEX-13NYB-0011-R10a-SM-5KM43 21.1
GTEX-ZDXO-0011-R10a-SM-4WWD8 21.0
GTEX-TSE9-0011-R10A-SM-3DB7O 20.8
GTEX-147F4-0011-R10b-SM-5S2WC 20.3
GTEX-12WSD-0011-R10b-SM-5GU79 20.0
GTEX-13OW6-0011-R10a-SM-5L3HE 20.0
GTEX-13G51-0011-R10b-SM-5LZYF 19.7
GTEX-Z93S-0011-R10a-SM-4RGNM 19.3
GTEX-ZUA1-0011-R10a-SM-51MT6 19.3
GTEX-12WSH-0011-R10a-SM-5LZUS 19.1
GTEX-13FLV-0011-R10b-SM-5LZZ2 18.5
GTEX-145LU-0011-R10a-SM-5PNWJ 18.1
GTEX-1445S-0011-R10a-SM-5PNWB 18.0
GTEX-11WQC-0011-R10a-SM-57WCT 17.5
GTEX-ZVT3-0011-R10b-SM-57WB6 17.4
GTEX-13FTZ-0011-R10b-SM-5KLZS 17.2
GTEX-12ZZW-0011-R10b-SM-5HL9X 16.6
GTEX-13JVG-0011-R10b-SM-5KM2P 16.6
GTEX-12126-0011-R10b-SM-5BC6T 16.1
GTEX-11GSP-0011-R10a-SM-5NQ7J 15.9
GTEX-11ZUS-0011-R10b-SM-5BC79 15.8
GTEX-14753-0011-R10b-SM-5S2WE 15.2
GTEX-1477Z-0011-R10b-SM-5S2RF 14.8
GTEX-ZE7O-0011-R10a-SM-57WAZ 14.4
GTEX-13IVO-0011-R10a-SM-5LZY3 14.0
GTEX-139TS-0011-R10a-SM-5K7TU 13.6
GTEX-ZXG5-0011-R10a-SM-57WDD 13.4
GTEX-131XW-0011-R10a-SM-5DUVA 12.8
GTEX-OXRO-0011-R10A-SM-2I5EH 12.6
GTEX-13NZA-0011-R10b-SM-5KM54 12.4
GTEX-ZV68-0011-R10a-SM-51MT7 11.5
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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