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PGD

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:59.2TPM
GTEx:21.0RPKM
FANTOM5:64.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Medium
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA031314

  

Endothelial cells

 Not detected  

Glandular cells

 Medium  

Peripheral nerve/ganglion

 Low  
 

COLON - HPA RNA-seq

Average TPM

59.2
overview Male, age 54
Sample 1
TPM: 70.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 58.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 69.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 38.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 46.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 54.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 85.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 52.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 57.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 74.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 70.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 53.0
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 38.2
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

21.0

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 11.7
Samples: 149

Max RPKM: 59.6
Min RPKM: 5.4
Std RPKM: 5.3
Median RPKM: 10.1
GTEX-11TT1-0926-SM-5GU5M 59.6
GTEX-Y5LM-1426-SM-5RQJL 25.2
GTEX-12WSJ-1426-SM-5GCON 20.8
GTEX-11EQ9-1526-SM-5PNY7 20.5
GTEX-11DXX-1926-SM-5EGJK 18.8
GTEX-1339X-1726-SM-5P9J9 18.5
GTEX-12WSL-1826-SM-5LZW9 18.3
GTEX-WI4N-2226-SM-4OOS9 18.2
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 28.0
Samples: 196

Max RPKM: 158.1
Min RPKM: 7.2
Std RPKM: 18.7
Median RPKM: 25.2
GTEX-14C38-2626-SM-5RQI4 158.1
GTEX-13W3W-2126-SM-5K7UX 135.0
GTEX-11TT1-1026-SM-5PNW7 104.4
GTEX-144GN-1126-SM-5LU33 90.6
GTEX-QDVN-1326-SM-48TZ3 83.1
GTEX-O5YT-1426-SM-3MJHC 62.7
GTEX-QV31-0826-SM-4R1KR 52.6
GTEX-146FQ-1926-SM-5NQBY 52.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

64.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 64.8
FF:10014-101C5 62,83,84 years, mixed 64.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.