Fields »
ABOUT
HELP
BLOG
USP21

COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:11.3TPM
GTEx:13.1RPKM
FANTOM5:21.5Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Low
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA028397

  

Endothelial cells

 Low  

Glandular cells

 Low  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

11.3
overview Male, age 54
Sample 1
TPM: 12.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 9.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 9.0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 7.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 5.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 11.7
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 11.6
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 12.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 13.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 13.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 15.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 13.0
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 12.0
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

13.1

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 14.1
Samples: 149

Max RPKM: 25.8
Min RPKM: 6.9
Std RPKM: 3.2
Median RPKM: 14
GTEX-ZAJG-2626-SM-5S2NU 25.8
GTEX-132AR-2826-SM-5IJFV 23.6
GTEX-139D8-2926-SM-5IJBM 22.0
GTEX-131XE-1026-SM-5EGKE 20.6
GTEX-13OW5-2826-SM-5KM1G 20.1
GTEX-XUW1-1826-SM-4BOQD 19.9
GTEX-146FH-2426-SM-5Q5EW 19.8
GTEX-XQ8I-2326-SM-4BOQC 19.7
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 12.4
Samples: 196

Max RPKM: 20
Min RPKM: 4.5
Std RPKM: 2.5
Median RPKM: 12.1
GTEX-13S86-1626-SM-5Q5C5 20.0
GTEX-WQUQ-2526-SM-4MVNO 19.2
GTEX-V955-1626-SM-4JBHJ 18.6
GTEX-XXEK-1926-SM-4BRVD 18.6
GTEX-13OW5-2626-SM-5MR3M 17.8
GTEX-U3ZH-1326-SM-4DXSF 17.7
GTEX-QEL4-1926-SM-4R1JI 17.3
GTEX-RU1J-1326-SM-46MUL 17.1
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

21.5

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 21.5
FF:10014-101C5 62,83,84 years, mixed 21.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.