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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA006653

 

Antibody CAB034376

 

Antibody CAB034378

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Santa Cruz Biotechnology
  Santa Cruz Biotechnology
 

Product name

HPA006653   sc-133222   sc-133224  

Host species

Rabbit   Mouse   Mouse  

Clonality

pAb   mAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Protein A/G   Protein A/G  

Other gene match

     

Released in version

14   10   10  

References

     

VALIDATION SUMMARY

 
 

Antibody HPA006653

 

Antibody CAB034376

 

Antibody CAB034378

 
Immunocytochemistry

Approved      
Immunohistochemistry

 

Validated
 

Validated
 
Western blot

Supported   Supported   Supported  
Protein array

Supported      

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA006653

 

Antibody CAB034376

 

Antibody CAB034378

 

Standard validation

Approved      

     

Figure description

Immunofluorescent staining of human cell line Hep G2 shows localization to cytosol.      

Antibody dilution

1:5      

Literature conformity

The subcellular location is partly supported by literature or no literature is available.      

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA006653

 

Antibody CAB034376

 

Antibody CAB034378

 

Formal validation: Orthogonal

 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 
Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
 

 
 

 

 
 

 

 

Figure description

  Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.  
 

Formal validation: Orthogonal

 
Validated

Spearman correlation >0.6 for protein and RNA expression in tissues.
 
Validated

Spearman correlation >0.6 for protein and RNA expression in tissues.
 

 
 

 

 
 

 

 

Figure description

  Distribution of protein expression (antibody staining) and RNA expression (TPM) across 37 tissues.   Distribution of protein expression (antibody staining) and RNA expression (TPM) across 37 tissues.  
 

Standard validation

  Supported   Supported  

     

Figure description

  Immunohistochemical staining of human liver shows strong cytoplasmic positivity in hepatocytes.   Immunohistochemical staining of human liver shows strong cytoplasmic positivity in hepatocytes.  

Expression

  RNA: detected in 5 tissues
Protein: detected in 11 cell types
  RNA: detected in 5 tissues
Protein: detected in 6 cell types
 

Retrieval

  HIER pH6   HIER pH6  

Antibody dilution

  1:4000   1:1000  

Literature conformity

  Consistent with extensive gene/protein characterization data.   Consistent with extensive gene/protein characterization data.  

RNA consistency

  Consistent with RNA expression data.   Consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA006653

 

Antibody CAB034376

 

Antibody CAB034378

 

Standard validation

Supported

Analysis performed using a standard panel of samples.
Single band corresponding to the predicted size in kDa (+/-20%).
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
  Supported

Analysis performed using a standard panel of samples.
Band of predicted size in kDa (+/-20%) with additional bands present.
 

     

Figure description

Lane 1: Marker [kDa] 230, 130, 95, 72, 56, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 100, 70, 55, 35, 25, 15, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 100, 70, 55, 35, 25, 15, 10
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

61.8, 58.5   61.8, 58.5   61.8, 58.5  

Antibody dilution

1:250   1:500   1:500  

PROTEIN ARRAY

 
 

Antibody HPA006653

 

Antibody CAB034376

 

Antibody CAB034378

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
     

     

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.      

Antibody dilution

1:500      

ANTIGEN INFORMATION

 
 

Antibody HPA006653

 

Antibody CAB034376

 

Antibody CAB034378

 

Antigen

Recombinant protein fragment   Synthetic peptide   Synthetic peptide  

Length (aa)

115      

Antigen sequence

GSPLSYRPVAIALDTKGPEIRTGILQGGPESEVELVKGSQVLVTVDPAFR
TRGNANTVWVDYPNIVRVVPVGGRIYIDDGLISLVVQKIGPEGLVTQVEN
GGVLGSRKGVNLPGA
     

Matching transcripts

PKLR-001 - ENSP00000339933 [100%]
PKLR-002 - ENSP00000376214 [100%]
     

Other gene match

     
ANTIGEN VIEW
PKLR-001
PKLR-002
 

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.