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GALNT13

GENERAL INFORMATION

Gene name

 GALNT13

Gene description

 Polypeptide N-acetylgalactosaminyltransferase 13

Protein class

 Enzymes
Predicted intracellular proteins

Predicted localization

 Intracellular

Number of transcripts

 6
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Group enriched (cerebral cortex, adrenal gland)
GTEx:Tissue enhanced (cerebellum)
FANTOM5:Group enriched (cerebellum, salivary gland)

Protein evidence

 Evidence at protein level

Protein expression

 Cytoplasmic expression mainly in processes of CNS.

DATA RELIABILITY

Data reliability
description

 Antibody staining in cells/structures not annotated, view images.

Reliability score

 Approved based on 1 antibody.
HPA060775
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RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
Caudate
N/A
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Bronchus
N/A
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Vagina
N/A
Adipose & soft tissue
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW
Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Group enriched (cerebral cortex, adrenal gland)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (cerebellum)
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Group enriched (cerebellum, salivary gland)

GENE INFORMATION

Gene name

 GALNT13 (HGNC Symbol)

Synonyms

 GalNAc-T13, KIAA1918

Description

 Polypeptide N-acetylgalactosaminyltransferase 13 (HGNC Symbol)

Entrez gene summary

 The GALNT13 protein is a member of the UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase (GalNAcT; EC 2.4.1.41) family, which initiate O-linked glycosylation of mucins (see MUC3A, MIM 158371) by the initial transfer of N-acetylgalactosamine (GalNAc) with an alpha-linkage to a serine or threonine residue.[supplied by OMIM, Apr 2004]

Chromosome

 2

Cytoband

Chromosome location (bp)

 153871913 - 154453849

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000144278 (version 83.38)

Entrez gene

 114805

UniProt

 Q8IUC8 (UniProt - Evidence at transcript level)

neXtProt

 NX_Q8IUC8

Antibodypedia

 GALNT13 antibodies

PROTEIN BROWSER
GALNT13-001
GALNT13-002
GALNT13-004
GALNT13-005
GALNT13-006
GALNT13-009

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
GALNT13-001
ENSP00000376570
ENST00000392825
Q8IUC8 [Direct mapping]
Polypeptide N-acetylgalactosaminyltransferase 13
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Enzymes
   ENZYME proteins
   Transferases
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0004653 [polypeptide N-acetylgalactosaminyltransferase activity]
GO:0006493 [protein O-linked glycosylation]
GO:0016021 [integral component of membrane]
GO:0016266 [O-glycan processing]
GO:0030246 [carbohydrate binding]
GO:0043687 [post-translational protein modification]
GO:0044267 [cellular protein metabolic process]
GO:0046872 [metal ion binding]
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 556 aa
64.1 kDa 		No 0
GALNT13-002
ENSP00000414403
ENST00000434213
C9JLI4 [Direct mapping]
Polypeptide N-acetylgalactosaminyltransferase 13
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   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
 19 aa
2.3 kDa 		No 0
GALNT13-004
ENSP00000396612
ENST00000453715
H7C0T6 [Direct mapping]
Polypeptide N-acetylgalactosaminyltransferase 13
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Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
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 106 aa
12.3 kDa 		No 0
GALNT13-005
ENSP00000387239
ENST00000409237
Q8IUC8 [Direct mapping]
Polypeptide N-acetylgalactosaminyltransferase 13
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Enzymes
   ENZYME proteins
   Transferases
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000139 [Golgi membrane]
GO:0004653 [polypeptide N-acetylgalactosaminyltransferase activity]
GO:0006493 [protein O-linked glycosylation]
GO:0016021 [integral component of membrane]
GO:0016266 [O-glycan processing]
GO:0030246 [carbohydrate binding]
GO:0043687 [post-translational protein modification]
GO:0044267 [cellular protein metabolic process]
GO:0046872 [metal ion binding]
Show all
 561 aa
64.6 kDa 		No 0
GALNT13-006
ENSP00000391469
ENST00000422126
H7BZU4 [Direct mapping]
Polypeptide N-acetylgalactosaminyltransferase 13
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Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
 45 aa
5.1 kDa 		No 0
GALNT13-009
ENSP00000406237
ENST00000450838
H7C2I5 [Direct mapping]
Polypeptide N-acetylgalactosaminyltransferase 13
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Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
 142 aa
16.4 kDa 		No 0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.