Tissue expression of GBAS - Summary - The Human Protein Atlas

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GBAS

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TISSUE

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CELL

CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	GBAS
Gene description	Glioblastoma amplified sequence
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	4
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

General cytoplasmic expression with a granular pattern.

DATA RELIABILITY
Data reliability description	Antibody staining mainly consistent with RNA expression data.
Reliability score	Supported based on 1 antibody. HPA063084
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	GBAS (HGNC Symbol)
Synonyms	NIPSNAP2
Description	Glioblastoma amplified sequence (HGNC Symbol)
Entrez gene summary	This gene encodes a member of the NipSnap family of proteins that may be involved in vesicular transport. The encoded protein is localized to mitochondria and plays a role in oxidative phosphorylation. A pseudogene of this gene is located on the long arm of chromosome 2. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Feb 2011]
Chromosome	7
Cytoband	p11.2
Chromosome location (bp)	55951793 - 56000181
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000146729 (version 83.38)
Entrez gene	2631
UniProt	O75323 (UniProt - Evidence at protein level)
neXtProt	NX_O75323
Antibodypedia	GBAS antibodies

PROTEIN BROWSER

GBAS-001	GBAS-002	GBAS-004	GBAS-005

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
GBAS-001 ENSP00000313050 ENST00000322090	O75323 [Direct mapping] Protein NipSnap homolog 2 Show all	Phobius predicted secreted proteins Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] GO:0005739 [mitochondrion] GO:0005887 [integral component of plasma membrane] GO:0006119 [oxidative phosphorylation] GO:0006754 [ATP biosynthetic process] GO:0016020 [membrane] GO:2000984 [negative regulation of ATP citrate synthase activity] Show all	286 aa 33.7 kDa	No	0
GBAS-002 ENSP00000406855 ENST00000446778	O75323 [Direct mapping] Protein NipSnap homolog 2 Show all	Phobius predicted secreted proteins Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] GO:0005739 [mitochondrion] GO:0005887 [integral component of plasma membrane] GO:0006119 [oxidative phosphorylation] GO:0006754 [ATP biosynthetic process] GO:0016020 [membrane] GO:2000984 [negative regulation of ATP citrate synthase activity] Show all	247 aa 29.1 kDa	No	0
GBAS-004 ENSP00000401185 ENST00000437587	C9K068 [Direct mapping] Protein NipSnap homolog 2 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		81 aa 9.8 kDa	No	0
GBAS-005 ENSP00000406336 ENST00000446692	C9J7B1 [Direct mapping] Protein NipSnap homolog 2 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		65 aa 7.9 kDa	No	0

Contact

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.