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TMEM47

GENERAL INFORMATION

Gene name

 TMEM47

Gene description

 Transmembrane protein 47

Protein class

 Predicted membrane proteins

Predicted localization

 Membrane

Number of transcripts

 1
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Mixed
GTEx:Expressed in all
FANTOM5:Mixed

Protein evidence

 Evidence at protein level

Protein expression

 General nuclear membrane expression.

DATA RELIABILITY

Data reliability
description

 Antibody staining mainly not consistent with RNA expression data. Pending external verification.

Reliability score

 Approved based on 1 antibody.
HPA046658
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RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
Caudate
N/A
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Bronchus
N/A
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Vagina
N/A
Adipose & soft tissue
Skin
Cerebral cortex

Lymph node

Liver

Oral mucosa

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW
Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Mixed
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Mixed

GENE INFORMATION

Gene name

 TMEM47 (HGNC Symbol)

Synonyms

 BCMP1, DKFZp564E153, DKFZP761J17121, TM4SF10

Description

 Transmembrane protein 47 (HGNC Symbol)

Entrez gene summary

 This gene encodes a member of the PMP22/EMP/claudin protein family. The encoded protein is localized to the ER and the plasma membrane. In dogs, transcripts of this gene exist at high levels in the brain. [provided by RefSeq, Jul 2008]

Chromosome

 X

Cytoband

 p21.1

Chromosome location (bp)

 34627064 - 34657288

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000147027 (version 83.38)

Entrez gene

 83604

UniProt

 Q9BQJ4 (UniProt - Evidence at protein level)

neXtProt

 NX_Q9BQJ4

Antibodypedia

 TMEM47 antibodies

PROTEIN BROWSER
TMEM47-001

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
TMEM47-001
ENSP00000275954
ENST00000275954
Q9BQJ4 [Direct mapping]
Transmembrane protein 47
A0A024RBY7 [Target identity:100%; Query identity:100%]
Transmembrane protein 47, isoform CRA_a
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Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Kim et al 2014)
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GO:0003674 [molecular_function]
GO:0005886 [plasma membrane]
GO:0005911 [cell-cell junction]
GO:0008150 [biological_process]
GO:0016021 [integral component of membrane]
GO:0030054 [cell junction]
GO:0098609 [cell-cell adhesion]
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 181 aa
20 kDa 		No 3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.