We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
SH3GLB2
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA KIDNEY

GENE/PROTEIN

Antibody validation


Dictionary

Kidney

Tissue proteome

Kidney

KIDNEY - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:18.8TPM
GTEx:46.8RPKM
FANTOM5:17.3Tags Per Million

KIDNEY - Annotated protein expression

Annotated protein
expression

Cells in glomeruli:Not detected
Cells in tubules:Low
 

Antibody staining

Antibody HPA021438

 

Antibody HPA024734

 

Cells in glomeruli

Medium   Not detected  

Cells in tubules

Medium   Low  
   
   
   

KIDNEY - HPA RNA-seq

Average TPM

18.8

overview Female, age 58
Sample 1
TPM: 40.2
Cell types%
Cells in tubules: 60
Cells in glomeruli: 20
Fibroblasts: 5
Other cell types: 15
overview Female, age 67
Sample 2
TPM: 22.2
Cell types%
Cells in tubules: 70
Cells in glomeruli: 15
Fibroblasts: 10
Other cell types: 5
overview Female, age 55
Sample 3
TPM: 40.6
Cell types%
Cells in tubules: 80
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 5
overview Male, age 46
Sample 4
TPM: 18.2
Cell types%
Cells in tubules: 60
Cells in glomeruli: 25
Fibroblasts: 5
Other cell types: 10
overview Female, age 57
Sample 5
TPM: 3.6
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Male, age 78
Sample 6
TPM: 12.2
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 20
overview Male, age 73
Sample 7
TPM: 15.0
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Female, age 59
Sample 8
TPM: 13.7
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 15
overview Female, age 48
Sample 9
TPM: 3.1
Cell types%
Cells in tubules: 60
Cells in glomeruli: 5
Fibroblasts: 10
Other cell types: 25

KIDNEY - GTEx RNA-seq

Average RPKM

46.8

GTEx sample id

RPKM

 

Kidney - Cortex

Kidney - Cortex
RPKM: 46.8
Samples: 32

Max RPKM: 87.3
Min RPKM: 21.6
Std RPKM: 16.5
Median RPKM: 42.7
GTEX-13112-2126-SM-5GCO4 87.3
GTEX-ZYT6-2226-SM-5GIC9 80.8
GTEX-RN64-1626-SM-48FD7 73.2
GTEX-11TTK-1926-SM-5PNW8 66.7
GTEX-12696-0926-SM-5FQTV 66.0
GTEX-13OVL-1826-SM-5KLZR 65.2
GTEX-13RTJ-2226-SM-5S2Q1 62.8
GTEX-UPIC-1126-SM-4IHLO 61.5
GTEX-ZVZP-0926-SM-5GIDB 56.1
GTEX-147F4-2626-SM-5Q5CS 54.1
GTEX-XPVG-0526-SM-4B65N 51.7
GTEX-ZYFG-1626-SM-5GZYY 50.9
GTEX-145MN-0326-SM-5QGQI 50.2
GTEX-13OVI-1126-SM-5KLZF 46.9
GTEX-1399S-0526-SM-5IJG8 46.4
GTEX-ZLFU-0926-SM-5P9F8 43.7
GTEX-QLQW-1626-SM-4R1K1 41.8
GTEX-T5JC-1526-SM-4DM68 41.0
GTEX-ZC5H-1726-SM-5HL7X 40.2
GTEX-13OW6-1826-SM-5N9F9 39.7
GTEX-11GS4-2326-SM-5A5KS 37.5
GTEX-1497J-0826-SM-5NQAJ 37.0
GTEX-12WSG-0826-SM-5EQ5A 36.6
GTEX-P4QS-1126-SM-3NMD5 36.5
GTEX-QDVN-1626-SM-48TZC 34.3
GTEX-11OF3-1326-SM-5N9FJ 33.9
GTEX-13NYB-1726-SM-5N9G2 31.5
GTEX-Y5V6-2026-SM-5IFHO 29.9
GTEX-N7MS-1626-SM-3LK5F 26.7
GTEX-13O1R-2526-SM-5N9FW 24.7
GTEX-NPJ8-2226-SM-3TW8D 21.8
GTEX-ZYFD-1526-SM-5NQ7T 21.6
Show all

KIDNEY - FANTOM5 CAGE

Average Tags Per Million

17.3

FANTOM5 sample id

Sample description

Tags Per Million

Kidney
Tags Per Million: 17.3
FF:10017-101C8 60,62,63 years, female 17.3

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.