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Cytoplasmic and membranous expression in photoreceptor outer segments.
DATA RELIABILITY
Data reliability description
Presumed off target binding observed and disregarded. External characterization data supports antibody staining but no internal RNA data available for correlation.
RNA tissue category: Group enriched (skin, rectum)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enriched (skin)
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Group enriched (retina, caudate)
GENE INFORMATION
Gene name
CDHR1 (HGNC Symbol)
Synonyms
CORD15, KIAA1775, PCDH21, RP65
Description
Cadherin-related family member 1 (HGNC Symbol)
Entrez gene summary
This gene belongs to the cadherin superfamily of calcium-dependent cell adhesion molecules. The encoded protein is a photoreceptor-specific cadherin that plays a role in outer segment disc morphogenesis. Mutations in this gene are associated with inherited retinal dystrophies. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2013]
Q96JP9 [Direct mapping] Cadherin-related family member 1 F1T0L2 [Target identity:100%; Query identity:100%] Cadherin-related family member 1; Protocadherin 21, isoform CRA_b
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Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Disease related genes Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
Q96JP9 [Direct mapping] Cadherin-related family member 1
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Predicted secreted proteins Secreted proteins predicted by MDSEC SignalP predicted secreted proteins Phobius predicted secreted proteins SPOCTOPUS predicted secreted proteins Disease related genes Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
