Tissue expression of NBAS - Summary - The Human Protein Atlas

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NBAS

TISSUE

CELL

CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	NBAS
Gene description	Neuroblastoma amplified sequence
Protein class	Disease related genes Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	7
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

General cytoplasmic expression.

DATA RELIABILITY
Data reliability description	Antibody staining mainly consistent with RNA expression data.
Reliability score	Approved based on 1 antibody. HPA036817
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	NBAS (HGNC Symbol)
Synonyms	NAG
Description	Neuroblastoma amplified sequence (HGNC Symbol)
Entrez gene summary	This gene encodes a protein with two leucine zipper domains, a ribosomal protein S14 signature domain and a Sec39 like domain. The protein is thought to be involved in Golgi-to-ER transport. Mutations in this gene are associated with short stature, optic nerve atrophy, and Pelger-Huet anomaly. [provided by RefSeq, Oct 2012]
Chromosome	2
Cytoband	p24.3
Chromosome location (bp)	15166909 - 15561330
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000151779 (version 83.38)
Entrez gene	51594
UniProt	A2RRP1 (UniProt - Evidence at protein level)
neXtProt	NX_A2RRP1
Antibodypedia	NBAS antibodies

PROTEIN BROWSER

NBAS-001	NBAS-002	NBAS-003	NBAS-005	NBAS-006	NBAS-007	NBAS-008

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
NBAS-001 ENSP00000281513 ENST00000281513	A2RRP1 [Direct mapping] Neuroblastoma-amplified sequence Show all	THUMBUP predicted membrane proteins Predicted intracellular proteins Disease related genes Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0000149 [SNARE binding] GO:0000956 [nuclear-transcribed mRNA catabolic process] GO:0005730 [nucleolus] GO:0005737 [cytoplasm] GO:0005783 [endoplasmic reticulum] GO:0005789 [endoplasmic reticulum membrane] GO:0005794 [Golgi apparatus] GO:0006890 [retrograde vesicle-mediated transport, Golgi to ER] GO:0015031 [protein transport] GO:0016020 [membrane] GO:0031965 [nuclear membrane] GO:0070939 [Dsl1p complex] GO:2000623 [negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay] Show all	2371 aa 268.6 kDa	No	0
NBAS-002 ENSP00000398411 ENST00000442506	H0Y5G7 [Direct mapping] Neuroblastoma-amplified sequence Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005488 [binding] GO:0005622 [intracellular] GO:0006890 [retrograde vesicle-mediated transport, Golgi to ER] Show all	1419 aa 160.4 kDa	No	0
NBAS-003 ENSP00000392421 ENST00000417461	H7C007 [Direct mapping] Neuroblastoma-amplified sequence Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		171 aa 18.8 kDa	No	0
NBAS-005 ENSP00000390920 ENST00000433283	H7BZR3 [Direct mapping] Neuroblastoma-amplified sequence Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		184 aa 21 kDa	No	0
NBAS-006 ENSP00000403119 ENST00000423602	H7C1Y9 [Direct mapping] Neuroblastoma-amplified sequence Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		137 aa 15.9 kDa	No	0
NBAS-007 ENSP00000391476 ENST00000429842	H7BZU5 [Direct mapping] Neuroblastoma-amplified sequence Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SPOCTOPUS predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0006890 [retrograde vesicle-mediated transport, Golgi to ER] GO:0016021 [integral component of membrane] Show all	204 aa 23.6 kDa	No	1
NBAS-008 ENSP00000396501 ENST00000441755	C9JCM7 [Direct mapping] Neuroblastoma-amplified sequence Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005730 [nucleolus] GO:0005737 [cytoplasm] GO:0005794 [Golgi apparatus] GO:0006890 [retrograde vesicle-mediated transport, Golgi to ER] GO:0031965 [nuclear membrane] Show all	281 aa 32.2 kDa	No	0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.