Tissue expression of UBP1 - Summary - The Human Protein Atlas

GENERAL INFORMATION
Gene name	UBP1
Gene description	Upstream binding protein 1 (LBP-1a)
Protein class	Predicted intracellular proteins Transcription factors
Predicted localization	Intracellular
Number of transcripts	4
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

DATA RELIABILITY
Reliability score	Pending normal tissue annotation.

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

Bronchus

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

Skin

N/A

Skin

N/A

PROTEIN EXPRESSION OVERVIEW
Pending normal tissue annotation.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	UBP1 (HGNC Symbol)
Synonyms	LBP-1a
Description	Upstream binding protein 1 (LBP-1a) (HGNC Symbol)
Entrez gene summary
Chromosome	3
Cytoband	p22.3
Chromosome location (bp)	33388336 - 33441371
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000153560 (version 83.38)
Entrez gene	7342
UniProt	Q9NZI7 (UniProt - Evidence at protein level)
neXtProt	NX_Q9NZI7
Antibodypedia	UBP1 antibodies

PROTEIN BROWSER

UBP1-001	UBP1-002	UBP1-003	UBP1-007

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
UBP1-001 ENSP00000283629 ENST00000283629	Q9NZI7 [Direct mapping] Upstream-binding protein 1 A0A024R2L0 [Target identity:100%; Query identity:100%] Upstream binding protein 1 (LBP-1a), isoform CRA_a Show all	Predicted intracellular proteins Transcription factors Immunoglobulin fold Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0001525 [angiogenesis] GO:0003677 [DNA binding] GO:0003700 [transcription factor activity, sequence-specific DNA binding] GO:0003714 [transcription corepressor activity] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0005737 [cytoplasm] GO:0006351 [transcription, DNA-templated] GO:0006357 [regulation of transcription from RNA polymerase II promoter] GO:0019079 [viral genome replication] GO:0043565 [sequence-specific DNA binding] GO:0045892 [negative regulation of transcription, DNA-templated] Show all	540 aa 60.5 kDa	No	0
UBP1-002 ENSP00000395558 ENST00000447368	Q9NZI7 [Direct mapping] Upstream-binding protein 1 A0A024R2J0 [Target identity:100%; Query identity:100%] Upstream binding protein 1 (LBP-1a), isoform CRA_b Show all	Predicted intracellular proteins Transcription factors Immunoglobulin fold Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0003677 [DNA binding] GO:0003700 [transcription factor activity, sequence-specific DNA binding] GO:0003714 [transcription corepressor activity] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0005737 [cytoplasm] GO:0006351 [transcription, DNA-templated] GO:0006357 [regulation of transcription from RNA polymerase II promoter] GO:0019079 [viral genome replication] GO:0043565 [sequence-specific DNA binding] GO:0045892 [negative regulation of transcription, DNA-templated] Show all	504 aa 56.5 kDa	No	0
UBP1-003 ENSP00000283628 ENST00000283628	Q9NZI7 [Direct mapping] Upstream-binding protein 1 A0A024R2L0 [Target identity:100%; Query identity:100%] Upstream binding protein 1 (LBP-1a), isoform CRA_a Show all	Predicted intracellular proteins Transcription factors Immunoglobulin fold Protein evidence (Ezkurdia et al 2014) Show all	GO:0003677 [DNA binding] GO:0003700 [transcription factor activity, sequence-specific DNA binding] GO:0003714 [transcription corepressor activity] GO:0005634 [nucleus] GO:0005654 [nucleoplasm] GO:0005737 [cytoplasm] GO:0006351 [transcription, DNA-templated] GO:0006357 [regulation of transcription from RNA polymerase II promoter] GO:0019079 [viral genome replication] GO:0043565 [sequence-specific DNA binding] GO:0045892 [negative regulation of transcription, DNA-templated] Show all	540 aa 60.5 kDa	No	0
UBP1-007 ENSP00000401614 ENST00000456378	C9JWL3 [Direct mapping] Upstream-binding protein 1 Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0043565 [sequence-specific DNA binding] Show all	148 aa 16.8 kDa	No	0