Expression of TTC39B in cancer - Summary

CANCER ATLAS

Gene description

Tetratricopeptide repeat domain 39B

Protein class

Predicted intracellular proteins, Predicted membrane proteins

Protein evidence

Evidence at protein level

Colorectal cancer

Breast cancer

Prostate cancer

Lung cancer

Liver cancer

STAINING SUMMARY

HPA054804

GENE INFORMATION
Gene name	TTC39B (HGNC Symbol)
Synonyms	C9orf52, FLJ33868
Description	Tetratricopeptide repeat domain 39B (HGNC Symbol)
Entrez gene summary
Chromosome	9
Cytoband	p22.3
Chromosome location (bp)	15163622 - 15307360
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000155158 (version 83.38)
Entrez gene	158219
UniProt	Q5VTQ0 (UniProt - Evidence at protein level)
neXtProt	NX_Q5VTQ0
Antibodypedia	TTC39B antibodies

PROTEIN BROWSER

TTC39B-001	TTC39B-004	TTC39B-005	TTC39B-007	TTC39B-201	TTC39B-202

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
TTC39B-001 ENSP00000422496 ENST00000512701	Q5VTQ0 [Direct mapping] Tetratricopeptide repeat protein 39B Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	682 aa 77 kDa	No	2
TTC39B-004 ENSP00000427314 ENST00000506891	H0YAJ6 [Direct mapping] Tetratricopeptide repeat protein 39B Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		69 aa 7.5 kDa	No	0
TTC39B-005 ENSP00000423392 ENST00000507993	Q5VTQ0 [Direct mapping] Tetratricopeptide repeat protein 39B Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	517 aa 59.5 kDa	No	2
TTC39B-007 ENSP00000426539 ENST00000507285	Q5VTQ0 [Direct mapping] Tetratricopeptide repeat protein 39B Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	517 aa 59.5 kDa	No	2
TTC39B-201 ENSP00000297615 ENST00000297615	Q5VTQ0 [Direct mapping] Tetratricopeptide repeat protein 39B Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	613 aa 69.6 kDa	No	2
TTC39B-202 ENSP00000370231 ENST00000380850	Q5VTQ0 [Direct mapping] Tetratricopeptide repeat protein 39B Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005515 [protein binding] Show all	669 aa 75.5 kDa	No	2