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Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

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Reliability

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Method

Validation

Method

Validation

Method

Validation

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Searches

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Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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SH3RF2
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA035903

 

Antibody HPA058119

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
 

Product name

HPA035903   HPA058119  

Host species

Rabbit   Rabbit  

Clonality

pAb   pAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand  

Other gene match

   

Released in version

7   13  

References

   

VALIDATION SUMMARY

 
 

Antibody HPA035903

 

Antibody HPA058119

 
Immunocytochemistry


Validated
 

Validated
 
Immunohistochemistry

  Uncertain  
Western blot

Uncertain   Uncertain  
Protein array

Supported   Approved  

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA035903

 

Antibody HPA058119

 

Formal validation: Independent

Validated

Antibody staining overlaps with antibody HPA058119.
 
Validated

Antibody staining overlaps with antibody HPA035903.
 
 

Standard validation

Supported   Supported  

   

Figure description

Immunofluorescent staining of human cell line A-431 shows localization to nucleoplasm.   Immunofluorescent staining of human cell line CACO-2 shows localization to nucleoplasm.  

Antibody dilution

1:96   1:60  

Literature conformity

The subcellular location is supported by literature.   The subcellular location is supported by literature.  

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA035903

 

Antibody HPA058119

 

Standard validation

  Uncertain  

   

Figure description

  Immunohistochemical staining of human testis shows strong cytoplasmic positivity in a subset of cells in seminiferous ducts.  

Expression

  RNA: detected in 29 tissues
Protein: detected in 44 cell types
 

Retrieval

  HIER pH6  

Antibody dilution

  1:800  

Literature conformity

  No avaliable gene/protein characterization data.  

RNA consistency

  Mainly not consistent with RNA expression data.  

WESTERN BLOT

 
 

Antibody HPA035903

 

Antibody HPA058119

 

Standard validation

Uncertain

Analysis performed using a standard panel of samples.
Only bands not corresponding to the predicted size.
  Uncertain

Analysis performed using a standard panel of samples.
Weak band of predicted size but with additional bands of higher intensity also present.
 

   

Figure description

   

Target mass (kDa)

79.3   79.3  

Antibody dilution

1:250   1:200  

PROTEIN ARRAY

 
 

Antibody HPA035903

 

Antibody HPA058119

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
  Approved

Pass with quality comment low specificity (binding to 1-2 PrESTs >15% and <40%).
 

   

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.  

Antibody dilution

1:3000   1:2400  

ANTIGEN INFORMATION

 
 

Antibody HPA035903

 

Antibody HPA058119

 

Antigen

Recombinant protein fragment   Recombinant protein fragment  

Length (aa)

83   85  

Antigen sequence

NYSPPPTKHYTSHPTSGKPEQPATLKASQPEAASLGPEMTVLFAHRSGCH
SGQQTDLRRKSALAKATTLVSTASGTQTVFPSK
 
QGSLRKGRSSMRKNGSLQRPLQSGIPTLVVGSLRRSPTMVLRPQQFQFYQ
PQGIPSSPSAVVVEMGSKPALTGEPALTCISRGSE
 

Matching transcripts

SH3RF2-001 - ENSP00000352028 [99%]
SH3RF2-002 - ENSP00000424497 [99%]
  SH3RF2-001 - ENSP00000352028 [100%]
SH3RF2-002 - ENSP00000424497 [100%]
 

Other gene match

   
ANTIGEN VIEW
SH3RF2-001
SH3RF2-002
 

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.