Expression of C1orf27 in cancer - Summary - The Human Protein Atlas

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C1orf27

TISSUE

CELL

CANCER

CANCER ATLAS

GENE/PROTEIN

Antibody validation

Dictionary


Level of antibody staining/expression
	High Medium Low Not detected

CANCER ATLAS

Gene description

Chromosome 1 open reading frame 27

Protein class

Predicted membrane proteins

Protein evidence

Evidence at protein level

Colorectal cancer

Breast cancer

Prostate cancer

Lung cancer

Liver cancer

STAINING SUMMARY

HPA015988

GENE INFORMATION
Gene name	C1orf27 (HGNC Symbol)
Synonyms	FLJ20505, odr-4, TTG1
Description	Chromosome 1 open reading frame 27 (HGNC Symbol)
Entrez gene summary
Chromosome	1
Cytoband	q31.1
Chromosome location (bp)	186375838 - 186421378
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000157181 (version 83.38)
Entrez gene	54953
UniProt	Q5SWX8 (UniProt - Evidence at protein level)
neXtProt	NX_Q5SWX8
Antibodypedia	C1orf27 antibodies

PROTEIN BROWSER

C1orf27-001	C1orf27-004	C1orf27-005

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
C1orf27-001 ENSP00000287859 ENST00000287859	Q5SWX8 [Direct mapping] Protein odr-4 homolog Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0016021 [integral component of membrane] Show all	454 aa 51.1 kDa	No	2
C1orf27-004 ENSP00000395084 ENST00000419367	Q5SWX8 [Direct mapping] Protein odr-4 homolog Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0016021 [integral component of membrane] Show all	422 aa 47.6 kDa	No	1
C1orf27-005 ENSP00000356440 ENST00000367470	Q5SWX8 [Direct mapping] Protein odr-4 homolog Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0016021 [integral component of membrane] Show all	431 aa 48.6 kDa	No	2

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.