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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:32.4TPM
GTEx:12.0RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glial cells:High
Neuronal cells:High
Neuropil:Medium
 

Antibody staining

Antibody HPA030917

 

Endothelial cells

Low  

Glial cells

High  

Neuronal cells

High  

Neuropil

Medium  
 
 
 

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

32.4

N/A Male, age 5
Sample 1
TPM: 36.4
overview Female, age 40
Sample 2
TPM: 21.1
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 39.8
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

12.0

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 11.7
Samples: 114

Max RPKM: 375.9
Min RPKM: 2.2
Std RPKM: 34.3
Median RPKM: 8.1
GTEX-144FL-3026-SM-5O99C 375.9
GTEX-QDT8-2926-SM-32PKC 16.1
GTEX-12WSD-3126-SM-5HL7P 14.8
GTEX-132Q8-3026-SM-5PNVG 14.3
GTEX-13FHO-3026-SM-5J1O9 14.2
GTEX-ZVT3-3026-SM-5E43N 13.8
GTEX-13NYB-3026-SM-5IJD7 12.3
GTEX-X585-3026-SM-46MWF 12.1
GTEX-N7MT-1126-SM-5SI7V 12.0
GTEX-111FC-3126-SM-5GZZ2 11.8
GTEX-1445S-3026-SM-5O9BR 11.7
GTEX-11EI6-3026-SM-5GZZO 11.1
GTEX-QMR6-1426-SM-32PLA 11.0
GTEX-11ZUS-2926-SM-5FQSL 10.9
GTEX-QVUS-2826-SM-3GADB 10.8
GTEX-117XS-3026-SM-5N9CA 10.6
GTEX-XLM4-3026-SM-4AT6L 10.6
GTEX-13VXU-2926-SM-5LU5C 10.5
GTEX-144GL-3026-SM-5Q5CW 10.4
GTEX-Y8DK-0826-SM-4TT3T 10.4
GTEX-13OW6-3026-SM-5J2MI 10.2
GTEX-NPJ8-1526-SM-2D7VU 10.2
GTEX-ZAK1-3026-SM-5S2MJ 10.2
GTEX-145LS-3126-SM-5Q5BY 10.1
GTEX-ZAJG-3126-SM-5HL9J 10.1
GTEX-1192X-3126-SM-5N9BY 10.0
GTEX-13FHP-3026-SM-5IJBS 10.0
GTEX-T6MN-2626-SM-32PMQ 10.0
GTEX-13OW8-2826-SM-5L3GC 9.9
GTEX-11ONC-2926-SM-5P9JM 9.8
GTEX-PVOW-2526-SM-2XCF7 9.8
GTEX-WVLH-3026-SM-3MJG9 9.8
GTEX-12ZZZ-3026-SM-5BC67 9.7
GTEX-QVJO-1426-SM-2S1QY 9.7
GTEX-145MF-2726-SM-5O995 9.5
GTEX-1399T-3026-SM-5KLZC 9.4
GTEX-13SLX-3126-SM-5S2Q5 9.4
GTEX-12WSC-3026-SM-5GCNF 9.3
GTEX-14BMV-3026-SM-5S2PQ 9.3
GTEX-PWO3-0926-SM-2I5EY 9.3
GTEX-145MH-3026-SM-5Q5DZ 9.2
GTEX-11TTK-2926-SM-5PNYP 9.1
GTEX-11NUK-2926-SM-5A5MD 9.0
GTEX-ZUA1-3026-SM-59HJC 9.0
GTEX-ZYFD-3026-SM-5E44C 9.0
GTEX-11DXY-3226-SM-5GIDE 8.9
GTEX-Y111-2726-SM-4TT3N 8.8
GTEX-1117F-3226-SM-5N9CT 8.6
GTEX-11PRG-2926-SM-5987A 8.6
GTEX-13QIC-2926-SM-5J2NF 8.6
GTEX-ZZPT-3026-SM-5GZXH 8.6
GTEX-11DXW-1126-SM-5H12Q 8.5
GTEX-11O72-2926-SM-5BC4V 8.4
GTEX-WZTO-2926-SM-3NM9I 8.4
GTEX-12ZZW-2926-SM-5LZUP 8.3
GTEX-131YS-3126-SM-5KLYT 8.3
GTEX-13NYC-2826-SM-5K7WR 8.1
GTEX-14A5I-2926-SM-5Q5CQ 8.1
GTEX-14ASI-3026-SM-5S2PN 8.1
GTEX-12WSA-2926-SM-5EQ4D 8.0
GTEX-RNOR-2326-SM-2TF4I 8.0
GTEX-12ZZY-3026-SM-5GCOU 7.9
GTEX-TSE9-3026-SM-3DB76 7.9
GTEX-WL46-2926-SM-3LK82 7.9
GTEX-12126-1026-SM-5P9JJ 7.8
GTEX-12ZZX-2926-SM-5GCOQ 7.8
GTEX-13NYS-3126-SM-5KLYV 7.6
GTEX-13O3O-3126-SM-5KM3H 7.6
GTEX-13JVG-3126-SM-5L3FH 7.5
GTEX-13OVJ-2826-SM-5L3GW 7.5
GTEX-145MG-3026-SM-5RQJA 7.5
GTEX-11EMC-3226-SM-5EGKW 7.4
GTEX-YJ89-3026-SM-5IFJI 7.4
GTEX-13PVQ-3026-SM-5SI93 7.3
GTEX-13S7M-3126-SM-5RQJQ 7.3
GTEX-OXRN-2426-SM-2I5EQ 7.3
GTEX-11WQK-3026-SM-5EQL6 7.2
GTEX-NPJ7-2726-SM-2I3FT 7.2
GTEX-Z93S-2926-SM-57WB9 7.2
GTEX-11GSP-3226-SM-5986O 7.1
GTEX-UTHO-3026-SM-3GAFB 7.1
GTEX-X4XX-3026-SM-3NMB2 7.0
GTEX-11GSO-2926-SM-5HL73 6.9
GTEX-13O3Q-2926-SM-5KM45 6.9
GTEX-T2IS-3026-SM-32QPM 6.9
GTEX-13PL6-3126-SM-5LUAR 6.8
GTEX-13X6K-2926-SM-5Q5D5 6.8
GTEX-R55F-1326-SM-5S2V4 6.8
GTEX-11GS4-3126-SM-5A5LH 6.7
GTEX-131XW-3126-SM-5LZUC 6.7
GTEX-139T8-1026-SM-5J2MC 6.7
GTEX-13OW7-3026-SM-5L3GY 6.7
GTEX-YFC4-3126-SM-5PNV6 6.7
GTEX-1128S-2726-SM-5H12C 6.6
GTEX-13FXS-3126-SM-5J2NN 6.6
GTEX-RU72-3026-SM-5SI7Y 6.6
GTEX-T5JC-2426-SM-3NMDB 6.6
GTEX-13OVH-3026-SM-5MR4N 6.5
GTEX-13X6J-3026-SM-5Q5CU 6.5
GTEX-Q2AG-2926-SM-2HMJ3 6.4
GTEX-ZE7O-3126-SM-5HL5X 6.4
GTEX-1313W-3126-SM-5LZUI 6.3
GTEX-WWYW-3126-SM-3NB39 6.3
GTEX-12WSH-3026-SM-5CVNI 6.0
GTEX-13FLW-1426-SM-5K7YE 5.7
GTEX-WHSE-3026-SM-3P5ZH 5.6
GTEX-XOTO-3026-SM-4B65M 5.6
GTEX-11NV4-2126-SM-5N9DS 5.4
GTEX-11OC5-0726-SM-5P9JK 5.4
GTEX-147GR-3026-SM-5S2ML 5.0
GTEX-13JUV-2926-SM-5LZX7 4.5
GTEX-13G51-3026-SM-5IJB8 4.2
GTEX-13IVO-2926-SM-5L3CZ 3.7
GTEX-11OF3-2926-SM-5HL78 2.2
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 12.4
Samples: 108

Max RPKM: 470.4
Min RPKM: 2.4
Std RPKM: 44.4
Median RPKM: 7.7
GTEX-X4EP-0011-R10B-SM-4QASJ 470.4
GTEX-11ZUS-0011-R10b-SM-5BC79 28.2
GTEX-13N2G-0011-R10a-SM-5MR34 25.0
GTEX-NPJ8-0011-R10A-SM-2YUMO 17.2
GTEX-XLM4-0011-R10A-SM-4AT5P 15.4
GTEX-QDT8-0011-R10A-SM-32PKG 15.2
GTEX-N7MT-0011-R10A-SM-2I3E1 14.0
GTEX-132Q8-0011-R10b-SM-5DUWZ 12.3
GTEX-13FHO-0011-R10b-SM-5J2MM 12.2
GTEX-13NYB-0011-R10a-SM-5KM43 12.2
GTEX-ZAB4-0011-R10a-SM-4SOKH 11.7
GTEX-145LS-0011-R10a-SM-5PNUQ 11.3
GTEX-X585-0011-R10A-SM-46MUY 11.0
GTEX-13QIC-0011-R10a-SM-5O9C7 10.5
GTEX-Y8DK-0011-R10A-SM-4SOK1 10.5
GTEX-QMR6-0011-R10A-SM-32PKO 10.4
GTEX-145MH-0011-R10b-SM-5PNUK 10.3
GTEX-12WSC-0011-R10a-SM-5GU57 10.2
GTEX-13OW6-0011-R10a-SM-5L3HE 10.2
GTEX-131YS-0011-R10b-SM-5EQ5N 10.0
GTEX-13N1W-0011-R10b-SM-5MR4H 10.0
GTEX-QVUS-0011-R10A-SM-3GIK3 10.0
GTEX-WL46-0011-R10A-SM-3MJFQ 10.0
GTEX-QVJO-0011-R10A-SM-2S1QJ 9.9
GTEX-T6MN-0011-R10A-SM-32QP7 9.7
GTEX-12ZZZ-0011-R10a-SM-5P9HC 9.6
GTEX-145MG-0011-R10a-SM-5PNWG 9.4
GTEX-N7MS-0011-R10A-SM-2HMJK 9.4
GTEX-WVLH-0011-R10A-SM-3MJFM 9.4
GTEX-13SLX-0011-R10a-SM-5P9HV 9.3
GTEX-NPJ7-0011-R10A-SM-2I3E5 9.3
GTEX-11H98-0011-R10b-SM-5NQ98 9.1
GTEX-13NYS-0011-R10a-SM-5MR4S 9.1
GTEX-13SLW-0011-R10a-SM-5S2UI 9.1
GTEX-12WSF-0011-R10a-SM-5LZVH 9.0
GTEX-13X6K-0011-R10a-SM-5P9JR 8.9
GTEX-14BIN-0011-R10a-SM-5S2UA 8.9
GTEX-14ASI-0011-R10b-SM-5S2VZ 8.8
GTEX-X4XX-0011-R10B-SM-46MWO 8.8
GTEX-13OVJ-0011-R10b-SM-5L3HT 8.7
GTEX-13OVL-0011-R10a-SM-5L3GS 8.5
GTEX-13RTJ-0011-R10b-SM-5O9CW 8.5
GTEX-ZDXO-0011-R10a-SM-4WWD8 8.5
GTEX-12WSD-0011-R10b-SM-5GU79 8.4
GTEX-13OW8-0011-R10a-SM-5L3H6 8.4
GTEX-13O3O-0011-R10a-SM-5LUA9 8.3
GTEX-S7SE-0011-R10A-SM-2XCDF 8.2
GTEX-13OW7-0011-R10a-SM-5L3H3 8.1
GTEX-13S7M-0011-R10b-SM-5PNZB 8.0
GTEX-1445S-0011-R10a-SM-5PNWB 8.0
GTEX-NL3H-0011-R10A-SM-2I3E9 8.0
GTEX-ZVT3-0011-R10b-SM-57WB6 8.0
GTEX-13FXS-0011-R10a-SM-5J2MA 7.9
GTEX-WZTO-0011-R10B-SM-4E3KB 7.8
GTEX-13X6I-0011-R10a-SM-5PNWI 7.7
GTEX-T5JC-0011-R10A-SM-32PM2 7.7
GTEX-12WSM-0011-R10a-SM-5DUWV 7.6
GTEX-13O3Q-0011-R10b-SM-5KM39 7.5
GTEX-147GR-0011-R10b-SM-5S2UM 7.5
GTEX-YFC4-0011-R10a-SM-4SOK5 7.5
GTEX-12ZZX-0011-R10b-SM-5DUWK 7.3
GTEX-13G51-0011-R10b-SM-5LZYF 7.3
GTEX-1313W-0011-R10b-SM-5DUXA 7.2
GTEX-P44H-0011-R10A-SM-2XCEK 7.2
GTEX-13X6J-0011-R10b-SM-5PNWA 7.1
GTEX-13NZA-0011-R10b-SM-5KM54 6.9
GTEX-Q2AG-0011-R10A-SM-2HMLA 6.9
GTEX-12WSH-0011-R10a-SM-5LZUS 6.7
GTEX-OXRN-0011-R10A-SM-2I5GC 6.7
GTEX-12WSA-0011-R10b-SM-5P9ET 6.6
GTEX-11WQK-0011-R10a-SM-5BC6R 6.5
GTEX-14BIL-0011-R10a-SM-5SI75 6.5
GTEX-YJ89-0011-R10a-SM-4SOK9 6.4
GTEX-ZF28-0011-R10a-SM-4WWEH 6.4
GTEX-TSE9-0011-R10A-SM-3DB7O 6.3
GTEX-ZUA1-0011-R10a-SM-51MT6 6.3
GTEX-ZVZQ-0011-R10b-SM-51MRT 6.3
GTEX-RVPU-0011-R10A-SM-2XCAH 6.1
GTEX-13FLV-0011-R10b-SM-5LZZ2 6.0
GTEX-145LU-0011-R10a-SM-5PNWJ 6.0
GTEX-ZE7O-0011-R10a-SM-57WAZ 6.0
GTEX-12WSE-0011-R10b-SM-5P9JV 5.9
GTEX-NL4W-0011-R10A-SM-2I3DY 5.9
GTEX-147F4-0011-R10b-SM-5S2WC 5.8
GTEX-13FLW-0011-R10b-SM-5LZZF 5.5
GTEX-13JUV-0011-R10b-SM-5LZXR 5.5
GTEX-WWYW-0011-R10A-SM-3NB35 5.5
GTEX-12ZZY-0011-R10b-SM-5HL7W 5.3
GTEX-13FTZ-0011-R10b-SM-5KLZS 5.3
GTEX-131XH-0011-R10a-SM-5EGLJ 5.2
GTEX-13JVG-0011-R10b-SM-5KM2P 5.2
GTEX-1477Z-0011-R10b-SM-5S2RF 5.1
GTEX-11WQC-0011-R10a-SM-57WCT 5.0
GTEX-Z93S-0011-R10a-SM-4RGNM 5.0
GTEX-12ZZW-0011-R10b-SM-5HL9X 4.9
GTEX-11GSP-0011-R10a-SM-5NQ7J 4.7
GTEX-12126-0011-R10b-SM-5BC6T 4.7
GTEX-131XW-0011-R10a-SM-5DUVA 4.4
GTEX-X261-0011-R10B-SM-4E3JT 4.4
GTEX-ZV68-0011-R10a-SM-51MT7 4.4
GTEX-139TS-0011-R10a-SM-5K7TU 4.3
GTEX-13CZV-0011-R10b-SM-5LZYD 4.3
GTEX-ZXG5-0011-R10a-SM-57WDD 4.3
GTEX-XMD1-0011-R10A-SM-4AT4A 4.2
GTEX-14753-0011-R10b-SM-5S2WE 4.1
GTEX-13QJC-0011-R10a-SM-5SI63 3.8
GTEX-13IVO-0011-R10a-SM-5LZY3 2.6
GTEX-OXRO-0011-R10A-SM-2I5EH 2.4
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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