We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
CCAR2
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:11.4RPKM
FANTOM5:61.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Medium
 

Antibody staining

Antibody HPA019907

 

Antibody HPA019943

 

Antibody CAB072827

 

Glial cells

Not detected   Not detected   Medium  

Neuronal cells

Medium   Medium   High  
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

11.4

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 11.4
Samples: 117

Max RPKM: 20.6
Min RPKM: 4
Std RPKM: 3.3
Median RPKM: 12.1
GTEX-WHSE-0011-R5A-SM-3P5ZO 20.6
GTEX-13G51-0011-R5a-SM-5L3EB 19.0
GTEX-S7SE-0011-R5A-SM-2XCDA 17.6
GTEX-131YS-0011-R5b-SM-5K7YB 17.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 17.4
GTEX-QVJO-0011-R5A-SM-2S1QM 16.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 16.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 16.6
GTEX-13OW6-0011-R5a-SM-5O9BK 16.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 16.1
GTEX-11GSP-0011-R5a-SM-57WBE 16.0
GTEX-N7MT-0011-R5a-SM-2I3G6 15.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 15.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 15.0
GTEX-132Q8-0011-R5a-SM-5IJDM 15.0
GTEX-R55E-0011-R5A-SM-2TC5N 14.9
GTEX-P44H-0011-R5A-SM-2XCEX 14.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 14.4
GTEX-13SLX-0011-R5a-SM-5O9BV 14.4
GTEX-145LS-0011-R5a-SM-5SI65 14.4
GTEX-WVLH-0011-R5A-SM-3MJFW 14.4
GTEX-13JUV-0011-R5a-SM-5LZY5 14.3
GTEX-145MH-0011-R5a-SM-5P9JT 14.3
GTEX-13X6I-0011-R5a-SM-5PNWW 14.1
GTEX-T6MN-0011-R5A-SM-32QPD 14.1
GTEX-11H98-0011-R5b-SM-57WCF 13.9
GTEX-N7MS-0011-R5a-SM-2HMK8 13.9
GTEX-WL46-0011-R5A-SM-3LK6V 13.9
GTEX-1313W-0011-R5b-SM-5L3EP 13.8
GTEX-XMD1-0011-R5A-SM-4AT47 13.7
GTEX-WZTO-0011-R5B-SM-3NMC5 13.6
GTEX-13X6K-0011-R5b-SM-5PNUE 13.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 13.4
GTEX-13VXU-0011-R5a-SM-5O9D7 13.3
GTEX-OHPN-0011-R5A-SM-2I5FF 13.3
GTEX-1399T-0011-R5b-SM-5IJDK 13.2
GTEX-WWYW-0011-R5A-SM-3NB3E 13.1
GTEX-13OVL-0011-R5b-SM-5L3FU 13.0
GTEX-14BIM-0011-R5b-SM-5S2RM 13.0
GTEX-13NYS-0011-R5a-SM-5MR4D 12.8
GTEX-13X6J-0011-R5b-SM-5PNWT 12.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 12.8
GTEX-UTHO-0011-R5A-SM-3GIJD 12.8
GTEX-13FXS-0011-R5b-SM-5LZYE 12.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 12.6
GTEX-13S7M-0011-R5b-SM-5P9HS 12.6
GTEX-13SLW-0011-R5b-SM-5SI6Z 12.6
GTEX-13FLW-0011-R5a-SM-5LZX6 12.5
GTEX-12WSC-0011-R5b-SM-5CVNS 12.4
GTEX-13OW7-0011-R5b-SM-5O9DM 12.4
GTEX-X4XX-0011-R5A-SM-46MWN 12.4
GTEX-X585-0011-R5A-SM-46MVI 12.4
GTEX-13JVG-0011-R5a-SM-5MR4O 12.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 12.3
GTEX-PVOW-0011-R5A-SM-32PL7 12.3
GTEX-RVPV-0011-R5A-SM-2TF69 12.3
GTEX-RU72-0011-R5A-SM-2TF6U 12.2
GTEX-13FLV-0011-R5a-SM-5LZWT 12.1
GTEX-14ABY-0011-R5b-SM-5SI7B 12.1
GTEX-13O3O-0011-R5b-SM-5KM44 12.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 12.0
GTEX-T5JC-0011-R5A-SM-32PLK 11.9
GTEX-13OW5-0011-R5b-SM-5L3FR 11.8
GTEX-ZUA1-0011-R5b-SM-51MTG 11.5
GTEX-NL4W-0011-R5a-SM-2I3GD 11.4
GTEX-12WSB-0011-R5b-SM-5GU67 11.1
GTEX-RVPU-0011-R5A-SM-2XCAD 11.1
GTEX-11OF3-0011-R5a-SM-57WB4 10.7
GTEX-139TS-0011-R5b-SM-5J2MZ 10.7
GTEX-139TT-0011-R5b-SM-5K7W8 10.7
GTEX-13OVH-0011-R5b-SM-5KM4L 10.6
GTEX-11NV4-0011-R5a-SM-5NQ88 10.5
GTEX-T2IS-0011-R5A-SM-32QP4 10.5
GTEX-13CZV-0011-R5a-SM-5K7XA 10.4
GTEX-13NYB-0011-R5a-SM-5MR45 10.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 10.1
GTEX-144GO-0011-R5a-SM-5PNUR 10.0
GTEX-QMR6-0011-R5A-SM-32PKT 10.0
GTEX-YFC4-0011-R5a-SM-4RGLR 9.9
GTEX-12WSF-0011-R5a-SM-5HL8K 9.7
GTEX-X261-0011-R5A-SM-3NMB4 9.7
GTEX-XOTO-0011-R5A-SM-4B657 9.7
GTEX-TSE9-0011-R5A-SM-3DB7J 9.6
GTEX-12WSD-0011-R5b-SM-5CVNG 9.4
GTEX-ZE7O-0011-R5a-SM-57WBO 9.4
GTEX-1445S-0011-R5a-SM-5PNUS 9.2
GTEX-12WSA-0011-R5b-SM-5GU5I 9.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 9.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 9.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 8.9
GTEX-Z93S-0011-R5b-SM-4RGNI 8.9
GTEX-ZXG5-0011-R5b-SM-57WBN 8.7
GTEX-14BIN-0011-R5b-SM-5SI78 8.6
GTEX-12ZZX-0011-R5a-SM-5HL89 8.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 8.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 8.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 8.3
GTEX-NL3H-0011-R5a-SM-2I3GB 8.2
GTEX-144GL-0011-R5b-SM-5PNUJ 7.2
GTEX-OXRN-0011-R5A-SM-2I5EF 7.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 7.2
GTEX-ZVT3-0011-R5a-SM-51MSI 6.9
GTEX-13112-0011-R5b-SM-5DUV8 6.7
GTEX-NPJ7-0011-R5a-SM-33HBK 6.4
GTEX-139T8-0011-R5b-SM-5J1MO 6.3
GTEX-13CIG-0011-R5b-SM-5L3F2 6.3
GTEX-ZV68-0011-R5a-SM-4YCDW 6.2
GTEX-11WQC-0011-R5a-SM-5BC74 6.1
GTEX-11UD1-0011-R5b-SM-5P9FP 6.0
GTEX-13CF2-0011-R5a-SM-5LZWS 5.8
GTEX-13FHP-0011-R5b-SM-5LZY2 5.6
GTEX-S7PM-0011-R5A-SM-3NM8G 5.5
GTEX-YJ89-0011-R5a-SM-4V6GM 5.5
GTEX-1477Z-0011-R5b-SM-5PNUO 5.4
GTEX-12WSH-0011-R5b-SM-5P9F3 4.7
GTEX-13NZA-0011-R5b-SM-5KM4K 4.1
GTEX-145MG-0011-R5b-SM-5S2VU 4.0
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

61.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 61.2
FF:10164-103B2 76 years, female 62.9
FF:10379-105H1 89 years, female 59.6

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.