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Gene name

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Method

Validation

Method

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Expression

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Specificity

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Specificity

Tissue

Detectable

Cell line

Detectable

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Score

Antibodies

Column

 
 
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RUNX1
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA004176

 

Antibody HPA037912

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Atlas Antibodies
Sigma-Aldrich
 

Product name

HPA004176   HPA037912  

Host species

Rabbit   Rabbit  

Clonality

pAb   pAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Affinity purified using the PrEST-antigen as affinity ligand  

Other gene match

   

Released in version

3   13  

References

1    

VALIDATION SUMMARY

 
 

Antibody HPA004176

 

Antibody HPA037912

 
Immunocytochemistry

Supported   Supported  
Immunohistochemistry


Validated
   
Western blot

Supported   Uncertain  
Protein array

Approved   Approved  

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA004176

 

Antibody HPA037912

 

Standard validation

Supported   Supported  

   

Figure description

Immunofluorescent staining of human cell line A-431 shows localization to nucleoplasm & vesicles.   Immunofluorescent staining of human cell line A-431 shows localization to nucleoplasm.  

Antibody dilution

1:24   1:200  

Literature conformity

The subcellular location is supported by literature.   The subcellular location is supported by literature.  

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA004176

 

Antibody HPA037912

 

Formal validation: Orthogonal

Validated

Pearson correlation >0.6 for protein and RNA expression in cell lines.
   

 

 

   

Figure description

Distribution of protein expression (antibody staining) and RNA expression (TPM) across 44 cell lines.    
 

Standard validation

Supported    

   

Figure description

Immunohistochemical staining of human bone marrow shows strong nuclear positivity in bone marrow poietic cells.    

Expression

RNA: detected in 35 tissues
Protein: detected in 50 cell types
   

Retrieval

HIER pH6    

Antibody dilution

1:25    

Literature conformity

Consistent with extensive gene/protein characterization data.    

RNA consistency

Mainly consistent with RNA expression data.    

WESTERN BLOT

 
 

Antibody HPA004176

 

Antibody HPA037912

 

Standard validation

Supported

Single band corresponding to the predicted size in kDa (+/-20%).
  Uncertain

Analysis performed using a standard panel of samples.
Only bands not corresponding to the predicted size.
 

   

Figure description

Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 10
Lane 2: Negative control (vector only transfected HEK293T lysate)
Lane 3: Over-expression Lysate (Co-expressed with a C-terminal myc-DDK tag (~3.1 kDa) in mammalian HEK293T cells, LY419764)
   

Target mass (kDa)

51.8, 48.7, 41.4   51.8, 48.7, 27.8, 27.4  

Antibody dilution

1:250   1:250  

PROTEIN ARRAY

 
 

Antibody HPA004176

 

Antibody HPA037912

 

Standard validation

Approved

Pass with quality comment low specificity (binding to 1-2 PrESTs >15% and <40%).
  Approved

Pass with quality comment low specificity (binding to 1-2 PrESTs >15% and <40%).
 

   

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.   Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.  

Antibody dilution

1:3000   1:30000  

ANTIGEN INFORMATION

 
 

Antibody HPA004176

 

Antibody HPA037912

 

Antigen

Recombinant protein fragment   Recombinant protein fragment  

Length (aa)

104   51  

Antigen sequence

PQPQSQMQDTRQIQPSPPWSYDQSYQYLGSIASPSVHPATPISPGRASGM
TTLSAELSSRLSTAPDLTAFSDPRQFPALPSISDPRMHYPGAFTYSPTPV
TSGI
 
LDDQTKPGSLSFSERLSELEQLRRTAMRVSPHHPAPTPNPRASLNHSTAF
N
 

Matching transcripts

RUNX1-001 - ENSP00000340690 [100%]
RUNX1-002 - ENSP00000300305 [100%]
RUNX1-201 - ENSP00000409227 [100%]
RUNX1-009 - ENSP00000382184 [91%]
  RUNX1-001 - ENSP00000340690 [100%]
RUNX1-002 - ENSP00000300305 [100%]
RUNX1-005 - ENSP00000351123 [100%]
RUNX1-012 - ENSP00000382182 [100%]
RUNX1-201 - ENSP00000409227 [100%]
 

Other gene match

   
ANTIGEN VIEW
RUNX1-001
RUNX1-002
RUNX1-005
RUNX1-009
RUNX1-012
RUNX1-201

RELEVANT PUBLICATIONS

 
 

Antibody HPA004176

 

Antibody HPA037912

 

1.

Expression of RUNX1 correlates with poor patient prognosis in triple negative breast cancer
Ferrari N et al
PLoS One 2014;9(6):e100759
Application: IHC, WB
   
 

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