We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
SAP30BP
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:10.8RPKM
FANTOM5:43.4Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:Medium
 

Antibody staining

Antibody HPA052943

 

Glial cells

High  

Neuronal cells

Medium  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

10.8

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 10.8
Samples: 117

Max RPKM: 22.1
Min RPKM: 4.7
Std RPKM: 2.4
Median RPKM: 10.8
GTEX-132Q8-0011-R5a-SM-5IJDM 22.1
GTEX-12WSA-0011-R5b-SM-5GU5I 17.1
GTEX-XMD1-0011-R5A-SM-4AT47 16.3
GTEX-13JUV-0011-R5a-SM-5LZY5 15.9
GTEX-X585-0011-R5A-SM-46MVI 15.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 14.6
GTEX-OHPN-0011-R5A-SM-2I5FF 14.3
GTEX-13X6K-0011-R5b-SM-5PNUE 14.0
GTEX-13X6I-0011-R5a-SM-5PNWW 13.9
GTEX-WWYW-0011-R5A-SM-3NB3E 13.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 13.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 13.5
GTEX-12WSF-0011-R5a-SM-5HL8K 13.3
GTEX-13NYS-0011-R5a-SM-5MR4D 13.3
GTEX-QMR6-0011-R5A-SM-32PKT 13.1
GTEX-N7MT-0011-R5a-SM-2I3G6 13.0
GTEX-12WSB-0011-R5b-SM-5GU67 12.9
GTEX-13OW6-0011-R5a-SM-5O9BK 12.8
GTEX-WL46-0011-R5A-SM-3LK6V 12.8
GTEX-RVPU-0011-R5A-SM-2XCAD 12.7
GTEX-13NYB-0011-R5a-SM-5MR45 12.6
GTEX-14BIM-0011-R5b-SM-5S2RM 12.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 12.6
GTEX-1399T-0011-R5b-SM-5IJDK 12.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 12.3
GTEX-13OW5-0011-R5b-SM-5L3FR 12.2
GTEX-TSE9-0011-R5A-SM-3DB7J 12.2
GTEX-X261-0011-R5A-SM-3NMB4 12.1
GTEX-11H98-0011-R5b-SM-57WCF 12.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 12.0
GTEX-13FLV-0011-R5a-SM-5LZWT 11.9
GTEX-13OVH-0011-R5b-SM-5KM4L 11.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 11.9
GTEX-NPJ7-0011-R5a-SM-33HBK 11.9
GTEX-RVPV-0011-R5A-SM-2TF69 11.9
GTEX-ZUA1-0011-R5b-SM-51MTG 11.9
GTEX-N7MS-0011-R5a-SM-2HMK8 11.8
GTEX-X4XX-0011-R5A-SM-46MWN 11.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 11.7
GTEX-13FXS-0011-R5b-SM-5LZYE 11.6
GTEX-NL4W-0011-R5a-SM-2I3GD 11.6
GTEX-11NV4-0011-R5a-SM-5NQ88 11.5
GTEX-144GO-0011-R5a-SM-5PNUR 11.5
GTEX-R55E-0011-R5A-SM-2TC5N 11.5
GTEX-11GSP-0011-R5a-SM-57WBE 11.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 11.3
GTEX-T6MN-0011-R5A-SM-32QPD 11.3
GTEX-WVLH-0011-R5A-SM-3MJFW 11.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 11.2
GTEX-131YS-0011-R5b-SM-5K7YB 11.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 11.2
GTEX-UTHO-0011-R5A-SM-3GIJD 11.2
GTEX-12WSC-0011-R5b-SM-5CVNS 11.1
GTEX-13G51-0011-R5a-SM-5L3EB 11.1
GTEX-139TS-0011-R5b-SM-5J2MZ 11.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 11.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 11.0
GTEX-WZTO-0011-R5B-SM-3NMC5 11.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 10.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 10.8
GTEX-P44H-0011-R5A-SM-2XCEX 10.8
GTEX-RU72-0011-R5A-SM-2TF6U 10.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 10.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 10.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 10.7
GTEX-11OF3-0011-R5a-SM-57WB4 10.6
GTEX-13O3O-0011-R5b-SM-5KM44 10.6
GTEX-13S7M-0011-R5b-SM-5P9HS 10.5
GTEX-13VXU-0011-R5a-SM-5O9D7 10.5
GTEX-QVJO-0011-R5A-SM-2S1QM 10.4
GTEX-PVOW-0011-R5A-SM-32PL7 10.3
GTEX-145LS-0011-R5a-SM-5SI65 10.2
GTEX-13FLW-0011-R5a-SM-5LZX6 10.0
GTEX-145MH-0011-R5a-SM-5P9JT 10.0
GTEX-S7SE-0011-R5A-SM-2XCDA 10.0
GTEX-T5JC-0011-R5A-SM-32PLK 10.0
GTEX-YFC4-0011-R5a-SM-4RGLR 10.0
GTEX-13CZV-0011-R5a-SM-5K7XA 9.9
GTEX-13OW7-0011-R5b-SM-5O9DM 9.9
GTEX-139TT-0011-R5b-SM-5K7W8 9.8
GTEX-13OVL-0011-R5b-SM-5L3FU 9.8
GTEX-ZXG5-0011-R5b-SM-57WBN 9.8
GTEX-13JVG-0011-R5a-SM-5MR4O 9.7
GTEX-13SLX-0011-R5a-SM-5O9BV 9.7
GTEX-139T8-0011-R5b-SM-5J1MO 9.6
GTEX-XOTO-0011-R5A-SM-4B657 9.6
GTEX-Z93S-0011-R5b-SM-4RGNI 9.6
GTEX-1445S-0011-R5a-SM-5PNUS 9.3
GTEX-12WSD-0011-R5b-SM-5CVNG 9.2
GTEX-ZE7O-0011-R5a-SM-57WBO 9.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 9.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 8.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 8.9
GTEX-1313W-0011-R5b-SM-5L3EP 8.8
GTEX-13X6J-0011-R5b-SM-5PNWT 8.8
GTEX-14BIN-0011-R5b-SM-5SI78 8.6
GTEX-14ABY-0011-R5b-SM-5SI7B 8.4
GTEX-11WQC-0011-R5a-SM-5BC74 8.3
GTEX-144GL-0011-R5b-SM-5PNUJ 8.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 8.2
GTEX-12ZZX-0011-R5a-SM-5HL89 8.1
GTEX-12WSH-0011-R5b-SM-5P9F3 7.7
GTEX-NL3H-0011-R5a-SM-2I3GB 7.7
GTEX-T2IS-0011-R5A-SM-32QP4 7.7
GTEX-ZV68-0011-R5a-SM-4YCDW 7.7
GTEX-13CIG-0011-R5b-SM-5L3F2 7.6
GTEX-ZVT3-0011-R5a-SM-51MSI 7.6
GTEX-13112-0011-R5b-SM-5DUV8 7.2
GTEX-1477Z-0011-R5b-SM-5PNUO 7.0
GTEX-OXRN-0011-R5A-SM-2I5EF 7.0
GTEX-S7PM-0011-R5A-SM-3NM8G 6.9
GTEX-11UD1-0011-R5b-SM-5P9FP 6.8
GTEX-13CF2-0011-R5a-SM-5LZWS 6.7
GTEX-YJ89-0011-R5a-SM-4V6GM 6.7
GTEX-13FHP-0011-R5b-SM-5LZY2 6.5
GTEX-13NZA-0011-R5b-SM-5KM4K 5.0
GTEX-145MG-0011-R5b-SM-5S2VU 4.7
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

43.4

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 43.4
FF:10164-103B2 76 years, female 66.2
FF:10379-105H1 89 years, female 20.6

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.