We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
IER5
  • TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA BREAST
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:8.1TPM
GTEx:13.2RPKM
FANTOM5:28.4Tags Per Million

BREAST - Annotated protein expression

Annotated protein
expression

Adipocytes:Not detected
Glandular cells:Medium
Myoepithelial cells:Medium
 

Antibody staining

Antibody HPA029894

 

Adipocytes

Not detected  

Glandular cells

Medium  

Myoepithelial cells

Medium  
 
 

BREAST - HPA RNA-seq

Average TPM

8.1

overview Female, age 52
Sample 1
TPM: 8.5
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80
Sample 2
TPM: 10.3
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47
Sample 3
TPM: 5.9
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38
Sample 4
TPM: 7.6
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seq

Average RPKM

13.2

GTEx sample id

RPKM

 

Breast - Mammary Tissue

Breast - Mammary Tissue
RPKM: 13.2
Samples: 214

Max RPKM: 43.2
Min RPKM: 2.6
Std RPKM: 6.7
Median RPKM: 12
GTEX-U412-1826-SM-4DXTJ 43.2
GTEX-ZU9S-1926-SM-5NQBP 37.3
GTEX-13PL6-2926-SM-5L3I2 31.0
GTEX-13FTY-2226-SM-5J1ND 27.4
GTEX-XBED-1626-SM-47JYN 27.3
GTEX-ZTX8-1226-SM-4YCE9 26.9
GTEX-XMD2-0926-SM-4WWEF 26.8
GTEX-R55F-1726-SM-2TF4R 25.9
GTEX-YFC4-1426-SM-5IFJG 25.6
GTEX-147F4-2826-SM-5NQBN 24.8
GTEX-13O3P-0826-SM-5L3DH 24.7
GTEX-WYBS-0926-SM-3NM94 24.6
GTEX-T2IS-1526-SM-32QPR 24.5
GTEX-XYKS-1326-SM-4BRUN 24.3
GTEX-11WQC-1726-SM-5GU4W 24.1
GTEX-XOT4-0726-SM-4GIAW 24.0
GTEX-R3RS-0626-SM-48FE1 23.8
GTEX-WRHU-0326-SM-3MJFY 23.6
GTEX-RWS6-1926-SM-47JXY 22.7
GTEX-ZF29-1926-SM-5S2P1 22.6
GTEX-S341-1526-SM-4AD6K 22.2
GTEX-WYJK-1326-SM-3NB2T 22.2
GTEX-Y5V5-2126-SM-4WWFO 22.0
GTEX-14AS3-1626-SM-5S2OY 21.9
GTEX-ZAJG-0626-SM-5HL8X 21.7
GTEX-13NZ8-0126-SM-5IJCT 21.3
GTEX-131XW-0726-SM-5EGK3 21.2
GTEX-SE5C-2126-SM-4BRUJ 20.9
GTEX-11EMC-2026-SM-5A5JV 20.5
GTEX-WYVS-1726-SM-3NMAY 20.5
GTEX-WXYG-2226-SM-4E3IM 20.4
GTEX-S4P3-1326-SM-4AD6V 19.8
GTEX-X15G-1626-SM-3NMB3 19.8
GTEX-13NZ9-1026-SM-5MR5K 19.7
GTEX-11TT1-2126-SM-5GU5Y 19.6
GTEX-139T8-0826-SM-5L3DE 19.3
GTEX-RU72-0626-SM-46MUI 19.3
GTEX-X4EP-2926-SM-3P5YQ 19.3
GTEX-12ZZX-1126-SM-5EGKB 19.0
GTEX-T5JW-2026-SM-4DM63 19.0
GTEX-1313W-0826-SM-5EQ4T 18.9
GTEX-11PRG-0826-SM-5EQ6A 18.7
GTEX-145LT-0726-SM-5S2VM 18.5
GTEX-UPK5-2326-SM-3P5Z8 18.3
GTEX-ZVT4-1026-SM-57WC4 18.3
GTEX-ZV7C-1826-SM-5NQ83 18.2
GTEX-ZY6K-1626-SM-5GZWV 18.2
GTEX-1269C-2426-SM-5FQSN 18.1
GTEX-ZLFU-2126-SM-4WWEV 18.1
GTEX-1399U-1826-SM-5PNZ1 17.9
GTEX-11GS4-2126-SM-5A5KR 17.8
GTEX-13D11-1026-SM-5IJFB 17.7
GTEX-QEL4-2126-SM-447AE 17.6
GTEX-Y3IK-2326-SM-4WWDT 17.6
GTEX-11WQK-2426-SM-5GU5C 17.5
GTEX-WI4N-1426-SM-3LK7H 17.5
GTEX-ZA64-1526-SM-5CVMD 17.5
GTEX-ZZPU-0626-SM-5E43T 17.5
GTEX-XMD1-0826-SM-4AT52 17.2
GTEX-XUW1-2326-SM-4BOO5 17.2
GTEX-11P81-1926-SM-5BC53 17.1
GTEX-133LE-1726-SM-5K7VQ 16.9
GTEX-UJHI-1426-SM-3DB9C 16.9
GTEX-XUJ4-1926-SM-4BOOV 16.8
GTEX-Y8LW-1626-SM-5IFHX 16.8
GTEX-ZLV1-1426-SM-4WWES 16.8
GTEX-S4UY-0726-SM-4AD6X 16.7
GTEX-11P7K-0726-SM-5EGKX 16.6
GTEX-ZVT2-1826-SM-5NQ8W 16.5
GTEX-13OW8-0226-SM-5K7UP 16.4
GTEX-ZF2S-2026-SM-5E461 16.4
GTEX-13O3O-0826-SM-5K7WE 16.3
GTEX-ZXES-0826-SM-5E43C 16.0
GTEX-1122O-1226-SM-5H113 15.6
GTEX-VJWN-0726-SM-3GIJ8 15.5
GTEX-ZC5H-2626-SM-5J2MG 15.3
GTEX-R53T-1526-SM-48FEK 15.2
GTEX-ZYFC-0826-SM-5E44K 15.0
GTEX-13W3W-1226-SM-5LU4H 14.9
GTEX-14ABY-2126-SM-5QGQZ 14.9
GTEX-T5JC-2126-SM-32PMO 14.7
GTEX-ZVE2-1226-SM-5NQ8R 14.7
GTEX-ZVZQ-0826-SM-51MRF 14.4
GTEX-13FHO-0826-SM-5L3E8 14.3
GTEX-13OW5-2226-SM-5L3HC 14.3
GTEX-SIU7-1626-SM-4BRUK 14.3
GTEX-12WSK-2226-SM-5GCO5 14.2
GTEX-11EM3-1326-SM-5N9C6 14.0
GTEX-ZF3C-2326-SM-5S2MZ 13.7
GTEX-13113-1726-SM-5GCOO 13.6
GTEX-TMMY-0726-SM-33HBE 13.6
GTEX-U3ZN-1926-SM-4DXSG 13.6
GTEX-13QIC-2326-SM-5LU5N 13.5
GTEX-111YS-1926-SM-5GICC 13.3
GTEX-Q2AG-0326-SM-48U1O 13.3
GTEX-QEG5-0726-SM-4R1JQ 13.1
GTEX-11I78-2226-SM-5PNYA 12.9
GTEX-131YS-0626-SM-5EGKL 12.9
GTEX-ZPIC-1126-SM-5BC7F 12.9
GTEX-ZTTD-1026-SM-51MRD 12.8
GTEX-13N11-1726-SM-5J1OJ 12.7
GTEX-117XS-1926-SM-5GICO 12.5
GTEX-ZDTT-2126-SM-5S2OJ 12.5
GTEX-13CF2-2026-SM-5K7VI 12.3
GTEX-T6MN-0726-SM-32PML 12.3
GTEX-11NSD-0926-SM-5N9DR 12.1
GTEX-11EI6-0626-SM-5985T 12.0
GTEX-12WSM-1726-SM-5BC6J 12.0
GTEX-QDT8-0626-SM-48TYW 12.0
GTEX-13PVQ-1026-SM-5KM3M 11.7
GTEX-XQ8I-2426-SM-4WAXY 11.7
GTEX-ZEX8-2226-SM-57WC6 11.6
GTEX-144GM-0926-SM-5O994 11.5
GTEX-W5X1-2326-SM-3GIL6 11.5
GTEX-ZUA1-1526-SM-59HLS 11.5
GTEX-13NZB-2126-SM-5MR4Y 11.3
GTEX-WOFL-0826-SM-3MJG1 11.3
GTEX-ZVTK-0326-SM-51MRR 11.2
GTEX-XUZC-1626-SM-4BRVP 11.1
GTEX-QVJO-1826-SM-447C9 11.0
GTEX-T2YK-2226-SM-32QPT 11.0
GTEX-Y9LG-1426-SM-5IFJZ 11.0
GTEX-139TU-0626-SM-5KM3X 10.9
GTEX-145MN-1926-SM-5SIAI 10.9
GTEX-TML8-1226-SM-32QON 10.7
GTEX-U3ZH-1426-SM-4DXSR 10.6
GTEX-144GL-2026-SM-5LU3O 10.5
GTEX-VUSG-2226-SM-4KKZO 10.5
GTEX-Y3I4-1526-SM-4TT7K 10.5
GTEX-1192X-2326-SM-5987X 10.4
GTEX-ZYWO-2326-SM-5GZY4 10.4
GTEX-1211K-1926-SM-5EQLB 10.2
GTEX-T6MO-0326-SM-32QOK 10.2
GTEX-11NV4-2026-SM-5N9DG 10.1
GTEX-132Q8-1426-SM-5EGK7 10.1
GTEX-13W46-0826-SM-5LU3H 10.1
GTEX-11GSO-1926-SM-5A5K3 10.0
GTEX-11ONC-2126-SM-5HL6E 10.0
GTEX-XV7Q-2326-SM-4BRVZ 9.9
GTEX-11DXW-0626-SM-5N9ER 9.8
GTEX-ZYW4-0826-SM-5GIDG 9.8
GTEX-13FTX-1126-SM-5N9EN 9.7
GTEX-1117F-2826-SM-5GZXL 9.6
GTEX-R55D-0826-SM-48FEA 9.6
GTEX-Y114-2026-SM-4TT7L 9.3
GTEX-12WSN-1326-SM-5GCNT 9.2
GTEX-146FH-0826-SM-5SI8T 9.2
GTEX-13S86-1226-SM-5S2OA 9.1
GTEX-YB5K-1626-SM-5IFIN 9.1
GTEX-YJ8O-2226-SM-5IFHW 9.0
GTEX-1314G-1226-SM-5BC6D 8.9
GTEX-117YX-1426-SM-5H12H 8.8
GTEX-13N1W-0626-SM-5MR4U 8.8
GTEX-11LCK-2426-SM-5HL5F 8.7
GTEX-Y111-2026-SM-4SOJA 8.6
GTEX-TKQ2-1826-SM-33HB2 8.5
GTEX-ZQUD-1926-SM-51MSA 8.4
GTEX-11DXY-2326-SM-5GICW 8.2
GTEX-13O61-1826-SM-5KM4I 8.1
GTEX-Y8E4-1626-SM-5S2MW 8.1
GTEX-12WSB-0626-SM-59HJO 8.0
GTEX-11OF3-1926-SM-59889 7.9
GTEX-Y5LM-1726-SM-4VDSX 7.9
GTEX-S7SE-0826-SM-4AT4D 7.8
GTEX-YFCO-1826-SM-4W1YH 7.8
GTEX-X261-0626-SM-3NMD9 7.7
GTEX-11EQ9-1826-SM-5Q5AJ 7.6
GTEX-132NY-0826-SM-5K7Y7 7.6
GTEX-14E6E-1326-SM-5S2NR 7.4
GTEX-11ZUS-0826-SM-5FQUY 7.2
GTEX-ZAB4-2526-SM-5HL8M 7.2
GTEX-132AR-0826-SM-5EGK6 7.1
GTEX-S32W-2026-SM-4AD6E 7.1
GTEX-ZWKS-2826-SM-5NQ74 7.1
GTEX-12BJ1-1826-SM-5HL9N 7.0
GTEX-145MO-0826-SM-5NQBL 7.0
GTEX-XQ3S-1326-SM-4BOPQ 6.6
GTEX-ZQG8-0726-SM-5P9H9 6.5
GTEX-YB5E-1726-SM-5IFJ3 6.2
GTEX-13FTW-1426-SM-5LZWZ 6.1
GTEX-S4Q7-1126-SM-4AD6R 6.1
GTEX-11DXZ-1926-SM-5GZZL 6.0
GTEX-U8XE-0826-SM-4E3J1 6.0
GTEX-139T6-1626-SM-5PNYZ 5.8
GTEX-YEC3-1026-SM-5IFI5 5.7
GTEX-ZDYS-1126-SM-5K7UB 5.6
GTEX-ZV6S-1826-SM-5NQ8D 5.6
GTEX-11TUW-1826-SM-5BC5D 5.4
GTEX-Y5V6-2126-SM-4WWFX 5.4
GTEX-13O3Q-2226-SM-5KM4O 5.3
GTEX-S33H-0326-SM-4AD6N 5.2
GTEX-XGQ4-0926-SM-4AT4U 5.2
GTEX-ZYT6-0126-SM-5E45J 5.2
GTEX-11ZTT-2326-SM-5EQLG 5.1
GTEX-ZDXO-0126-SM-5S2ND 5.1
GTEX-QMRM-1626-SM-4R1KV 5.0
GTEX-11DZ1-0326-SM-5N9BN 4.9
GTEX-WY7C-2726-SM-3NB3P 4.9
GTEX-WFON-1826-SM-3GILG 4.7
GTEX-PSDG-1626-SM-48TCQ 4.6
GTEX-11P82-1326-SM-5HL62 4.5
GTEX-TKQ1-0226-SM-33HB5 4.5
GTEX-14753-2426-SM-5LU8U 4.4
GTEX-XMK1-1126-SM-4IHJ8 4.4
GTEX-ZZ64-1226-SM-5E43R 4.4
GTEX-RUSQ-2026-SM-4GIAK 4.2
GTEX-11O72-2126-SM-5N9FO 4.0
GTEX-145ME-1526-SM-5Q5F2 4.0
GTEX-UTHO-1026-SM-3GAF7 4.0
GTEX-X4XY-0926-SM-4E3JD 4.0
GTEX-REY6-2426-SM-48FF5 3.7
GTEX-13CF3-2126-SM-5IFJP 3.6
GTEX-ZT9W-2026-SM-51MRA 3.0
GTEX-12KS4-0126-SM-5Q5A5 2.6
Show all

BREAST - FANTOM5 CAGE

Average Tags Per Million

28.4

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 28.4
FF:10080-102A8 77 years, female 28.4

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.