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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:62.1TPM
GTEx:12.3RPKM

CEREBRAL CORTEX - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Endothelial cells:Low
Glial cells:Not detected
Neuronal cells:Medium
Neuropil:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA040470

 

Endothelial cells

Low  

Glial cells

Not detected  

Neuronal cells

Medium  

Neuropil

Not detected  
 
 
 

CEREBRAL CORTEX - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

62.1

N/A Male, age 5
Sample 1
TPM: 55.3
overview Female, age 40
Sample 2
TPM: 83.3
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 47.6
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

12.3

GTEx sample id

RPKM

 

Brain - Cortex

Brain - Cortex
RPKM: 11.1
Samples: 114

Max RPKM: 19.3
Min RPKM: 3.8
Std RPKM: 3.1
Median RPKM: 11.4
GTEX-QMR6-1426-SM-32PLA 19.3
GTEX-TSE9-3026-SM-3DB76 17.8
GTEX-11OF3-2926-SM-5HL78 17.4
GTEX-13OW7-3026-SM-5L3GY 17.2
GTEX-11NUK-2926-SM-5A5MD 16.6
GTEX-PVOW-2526-SM-2XCF7 16.2
GTEX-11O72-2926-SM-5BC4V 15.8
GTEX-XLM4-3026-SM-4AT6L 15.5
GTEX-131XW-3126-SM-5LZUC 15.2
GTEX-13X6K-2926-SM-5Q5D5 15.1
GTEX-ZAK1-3026-SM-5S2MJ 15.1
GTEX-11GSP-3226-SM-5986O 15.0
GTEX-T2IS-3026-SM-32QPM 15.0
GTEX-WZTO-2926-SM-3NM9I 15.0
GTEX-12ZZZ-3026-SM-5BC67 14.9
GTEX-1399T-3026-SM-5KLZC 14.2
GTEX-WHSE-3026-SM-3P5ZH 14.2
GTEX-12ZZX-2926-SM-5GCOQ 14.1
GTEX-13X6J-3026-SM-5Q5CU 14.1
GTEX-12WSD-3126-SM-5HL7P 13.9
GTEX-13OW6-3026-SM-5J2MI 13.8
GTEX-ZE7O-3126-SM-5HL5X 13.7
GTEX-13JVG-3126-SM-5L3FH 13.6
GTEX-11DXY-3226-SM-5GIDE 13.5
GTEX-14ASI-3026-SM-5S2PN 13.4
GTEX-144GL-3026-SM-5Q5CW 13.3
GTEX-11GSO-2926-SM-5HL73 13.2
GTEX-13FXS-3126-SM-5J2NN 13.2
GTEX-Y8DK-0826-SM-4TT3T 13.2
GTEX-13OVJ-2826-SM-5L3GW 13.1
GTEX-11DXW-1126-SM-5H12Q 13.0
GTEX-11TTK-2926-SM-5PNYP 13.0
GTEX-RU72-3026-SM-5SI7Y 13.0
GTEX-14BMV-3026-SM-5S2PQ 12.9
GTEX-11PRG-2926-SM-5987A 12.7
GTEX-14A5I-2926-SM-5Q5CQ 12.7
GTEX-UTHO-3026-SM-3GAFB 12.7
GTEX-131YS-3126-SM-5KLYT 12.6
GTEX-145MH-3026-SM-5Q5DZ 12.6
GTEX-145MF-2726-SM-5O995 12.4
GTEX-13S7M-3126-SM-5RQJQ 12.3
GTEX-RNOR-2326-SM-2TF4I 12.3
GTEX-OXRN-2426-SM-2I5EQ 12.2
GTEX-ZUA1-3026-SM-59HJC 12.2
GTEX-13PL6-3126-SM-5LUAR 12.1
GTEX-145MG-3026-SM-5RQJA 12.1
GTEX-YFC4-3126-SM-5PNV6 12.1
GTEX-11EMC-3226-SM-5EGKW 12.0
GTEX-13O3O-3126-SM-5KM3H 12.0
GTEX-R55F-1326-SM-5S2V4 12.0
GTEX-111FC-3126-SM-5GZZ2 11.9
GTEX-13OVH-3026-SM-5MR4N 11.7
GTEX-XOTO-3026-SM-4B65M 11.7
GTEX-1128S-2726-SM-5H12C 11.6
GTEX-X4XX-3026-SM-3NMB2 11.6
GTEX-11EI6-3026-SM-5GZZO 11.5
GTEX-ZVT3-3026-SM-5E43N 11.5
GTEX-Y111-2726-SM-4TT3N 11.4
GTEX-12ZZW-2926-SM-5LZUP 11.3
GTEX-145LS-3126-SM-5Q5BY 11.3
GTEX-13O3Q-2926-SM-5KM45 11.1
GTEX-13OW8-2826-SM-5L3GC 11.1
GTEX-WVLH-3026-SM-3MJG9 11.1
GTEX-11OC5-0726-SM-5P9JK 11.0
GTEX-13VXU-2926-SM-5LU5C 11.0
GTEX-QVUS-2826-SM-3GADB 10.9
GTEX-11WQK-3026-SM-5EQL6 10.8
GTEX-WWYW-3126-SM-3NB39 10.7
GTEX-13NYC-2826-SM-5K7WR 10.6
GTEX-T5JC-2426-SM-3NMDB 10.6
GTEX-QVJO-1426-SM-2S1QY 10.5
GTEX-12126-1026-SM-5P9JJ 10.0
GTEX-1445S-3026-SM-5O9BR 10.0
GTEX-ZYFD-3026-SM-5E44C 9.9
GTEX-YJ89-3026-SM-5IFJI 9.8
GTEX-11ZUS-2926-SM-5FQSL 9.7
GTEX-PWO3-0926-SM-2I5EY 9.7
GTEX-13PVQ-3026-SM-5SI93 9.6
GTEX-13QIC-2926-SM-5J2NF 9.6
GTEX-12WSH-3026-SM-5CVNI 9.5
GTEX-12ZZY-3026-SM-5GCOU 9.4
GTEX-13FHP-3026-SM-5IJBS 9.4
GTEX-QDT8-2926-SM-32PKC 9.4
GTEX-WL46-2926-SM-3LK82 9.4
GTEX-12WSC-3026-SM-5GCNF 9.3
GTEX-13JUV-2926-SM-5LZX7 9.3
GTEX-T6MN-2626-SM-32PMQ 9.3
GTEX-117XS-3026-SM-5N9CA 8.9
GTEX-11ONC-2926-SM-5P9JM 8.9
GTEX-1192X-3126-SM-5N9BY 8.6
GTEX-13NYB-3026-SM-5IJD7 8.6
GTEX-13FHO-3026-SM-5J1O9 8.3
GTEX-1313W-3126-SM-5LZUI 7.9
GTEX-Q2AG-2926-SM-2HMJ3 7.9
GTEX-132Q8-3026-SM-5PNVG 7.8
GTEX-13SLX-3126-SM-5S2Q5 7.8
GTEX-13FLW-1426-SM-5K7YE 7.7
GTEX-147GR-3026-SM-5S2ML 7.7
GTEX-13NYS-3126-SM-5KLYV 7.3
GTEX-X585-3026-SM-46MWF 7.2
GTEX-Z93S-2926-SM-57WB9 7.2
GTEX-13IVO-2926-SM-5L3CZ 7.1
GTEX-12WSA-2926-SM-5EQ4D 6.7
GTEX-139T8-1026-SM-5J2MC 6.7
GTEX-11GS4-3126-SM-5A5LH 6.1
GTEX-11NV4-2126-SM-5N9DS 5.9
GTEX-ZZPT-3026-SM-5GZXH 5.6
GTEX-N7MT-1126-SM-5SI7V 5.5
GTEX-13G51-3026-SM-5IJB8 5.2
GTEX-ZAJG-3126-SM-5HL9J 4.9
GTEX-NPJ7-2726-SM-2I3FT 4.8
GTEX-144FL-3026-SM-5O99C 4.6
GTEX-1117F-3226-SM-5N9CT 4.4
GTEX-NPJ8-1526-SM-2D7VU 3.8
Show all
 

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 13.6
Samples: 108

Max RPKM: 23.9
Min RPKM: 4.1
Std RPKM: 4.1
Median RPKM: 13.7
GTEX-P44H-0011-R10A-SM-2XCEK 23.9
GTEX-QDT8-0011-R10A-SM-32PKG 23.6
GTEX-13OW8-0011-R10a-SM-5L3H6 22.7
GTEX-QMR6-0011-R10A-SM-32PKO 22.2
GTEX-13OVJ-0011-R10b-SM-5L3HT 21.6
GTEX-S7SE-0011-R10A-SM-2XCDF 20.6
GTEX-XLM4-0011-R10A-SM-4AT5P 20.2
GTEX-T6MN-0011-R10A-SM-32QP7 20.1
GTEX-WVLH-0011-R10A-SM-3MJFM 20.1
GTEX-QVUS-0011-R10A-SM-3GIK3 19.6
GTEX-WL46-0011-R10A-SM-3MJFQ 19.5
GTEX-13FLV-0011-R10b-SM-5LZZ2 18.8
GTEX-TSE9-0011-R10A-SM-3DB7O 18.6
GTEX-12126-0011-R10b-SM-5BC6T 18.0
GTEX-1445S-0011-R10a-SM-5PNWB 18.0
GTEX-145LU-0011-R10a-SM-5PNWJ 17.5
GTEX-13SLW-0011-R10a-SM-5S2UI 17.3
GTEX-QVJO-0011-R10A-SM-2S1QJ 17.2
GTEX-YFC4-0011-R10a-SM-4SOK5 17.1
GTEX-13JUV-0011-R10b-SM-5LZXR 16.9
GTEX-14753-0011-R10b-SM-5S2WE 16.8
GTEX-13OVL-0011-R10a-SM-5L3GS 16.7
GTEX-131YS-0011-R10b-SM-5EQ5N 16.6
GTEX-12WSD-0011-R10b-SM-5GU79 16.5
GTEX-11H98-0011-R10b-SM-5NQ98 16.4
GTEX-139TS-0011-R10a-SM-5K7TU 16.3
GTEX-13FXS-0011-R10a-SM-5J2MA 16.2
GTEX-Q2AG-0011-R10A-SM-2HMLA 16.2
GTEX-12WSE-0011-R10b-SM-5P9JV 16.1
GTEX-145MH-0011-R10b-SM-5PNUK 16.0
GTEX-ZAB4-0011-R10a-SM-4SOKH 15.8
GTEX-11GSP-0011-R10a-SM-5NQ7J 15.7
GTEX-ZUA1-0011-R10a-SM-51MT6 15.7
GTEX-11WQC-0011-R10a-SM-57WCT 15.4
GTEX-12ZZX-0011-R10b-SM-5DUWK 15.4
GTEX-Y8DK-0011-R10A-SM-4SOK1 15.2
GTEX-13G51-0011-R10b-SM-5LZYF 15.1
GTEX-14ASI-0011-R10b-SM-5S2VZ 15.1
GTEX-X4XX-0011-R10B-SM-46MWO 15.0
GTEX-1477Z-0011-R10b-SM-5S2RF 14.9
GTEX-12WSM-0011-R10a-SM-5DUWV 14.8
GTEX-13FTZ-0011-R10b-SM-5KLZS 14.8
GTEX-145MG-0011-R10a-SM-5PNWG 14.7
GTEX-14BIL-0011-R10a-SM-5SI75 14.7
GTEX-T5JC-0011-R10A-SM-32PM2 14.6
GTEX-13CZV-0011-R10b-SM-5LZYD 14.4
GTEX-13S7M-0011-R10b-SM-5PNZB 14.4
GTEX-147F4-0011-R10b-SM-5S2WC 14.4
GTEX-13X6K-0011-R10a-SM-5P9JR 14.3
GTEX-13FHO-0011-R10b-SM-5J2MM 14.0
GTEX-13O3Q-0011-R10b-SM-5KM39 14.0
GTEX-12ZZW-0011-R10b-SM-5HL9X 13.9
GTEX-YJ89-0011-R10a-SM-4SOK9 13.8
GTEX-WZTO-0011-R10B-SM-4E3KB 13.7
GTEX-145LS-0011-R10a-SM-5PNUQ 13.6
GTEX-ZVZQ-0011-R10b-SM-51MRT 13.6
GTEX-12ZZY-0011-R10b-SM-5HL7W 13.5
GTEX-12WSC-0011-R10a-SM-5GU57 13.4
GTEX-WWYW-0011-R10A-SM-3NB35 13.4
GTEX-13X6J-0011-R10b-SM-5PNWA 13.3
GTEX-12ZZZ-0011-R10a-SM-5P9HC 13.1
GTEX-13OW6-0011-R10a-SM-5L3HE 13.1
GTEX-OXRN-0011-R10A-SM-2I5GC 13.0
GTEX-X585-0011-R10A-SM-46MUY 12.6
GTEX-131XH-0011-R10a-SM-5EGLJ 12.4
GTEX-13N1W-0011-R10b-SM-5MR4H 12.2
GTEX-12WSF-0011-R10a-SM-5LZVH 12.1
GTEX-13NYB-0011-R10a-SM-5KM43 12.1
GTEX-N7MS-0011-R10A-SM-2HMJK 12.1
GTEX-13OW7-0011-R10a-SM-5L3H3 12.0
GTEX-14BIN-0011-R10a-SM-5S2UA 12.0
GTEX-132Q8-0011-R10b-SM-5DUWZ 11.8
GTEX-13QIC-0011-R10a-SM-5O9C7 11.7
GTEX-12WSH-0011-R10a-SM-5LZUS 11.6
GTEX-147GR-0011-R10b-SM-5S2UM 11.6
GTEX-13RTJ-0011-R10b-SM-5O9CW 11.5
GTEX-N7MT-0011-R10A-SM-2I3E1 11.4
GTEX-ZV68-0011-R10a-SM-51MT7 11.4
GTEX-ZVT3-0011-R10b-SM-57WB6 11.2
GTEX-ZDXO-0011-R10a-SM-4WWD8 11.1
GTEX-13X6I-0011-R10a-SM-5PNWI 10.9
GTEX-NPJ7-0011-R10A-SM-2I3E5 10.9
GTEX-11WQK-0011-R10a-SM-5BC6R 10.8
GTEX-13O3O-0011-R10a-SM-5LUA9 10.7
GTEX-RVPU-0011-R10A-SM-2XCAH 10.5
GTEX-ZF28-0011-R10a-SM-4WWEH 10.4
GTEX-Z93S-0011-R10a-SM-4RGNM 10.2
GTEX-1313W-0011-R10b-SM-5DUXA 10.1
GTEX-13FLW-0011-R10b-SM-5LZZF 9.9
GTEX-131XW-0011-R10a-SM-5DUVA 9.7
GTEX-OXRO-0011-R10A-SM-2I5EH 9.6
GTEX-X4EP-0011-R10B-SM-4QASJ 9.3
GTEX-NL4W-0011-R10A-SM-2I3DY 9.2
GTEX-11ZUS-0011-R10b-SM-5BC79 9.1
GTEX-13SLX-0011-R10a-SM-5P9HV 8.5
GTEX-13JVG-0011-R10b-SM-5KM2P 8.4
GTEX-12WSA-0011-R10b-SM-5P9ET 8.1
GTEX-NL3H-0011-R10A-SM-2I3E9 7.9
GTEX-ZXG5-0011-R10a-SM-57WDD 7.9
GTEX-13QJC-0011-R10a-SM-5SI63 7.8
GTEX-13N2G-0011-R10a-SM-5MR34 7.5
GTEX-X261-0011-R10B-SM-4E3JT 7.5
GTEX-13NZA-0011-R10b-SM-5KM54 6.7
GTEX-NPJ8-0011-R10A-SM-2YUMO 6.7
GTEX-13NYS-0011-R10a-SM-5MR4S 5.8
GTEX-XMD1-0011-R10A-SM-4AT4A 4.8
GTEX-ZE7O-0011-R10a-SM-57WAZ 4.4
GTEX-13IVO-0011-R10a-SM-5LZY3 4.1
Show all

CEREBRAL CORTEX - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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