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TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:51.2TPM
GTEx:9.9RPKM
FANTOM5:12.5Tags Per Million

TESTIS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in seminiferous ducts:Medium
Leydig cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA040470

 

Cells in seminiferous ducts

Medium  

Leydig cells

Medium  
 
 
 

TESTIS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

51.2

overview Male, age 56
Sample 1
TPM: 27.0
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 2
TPM: 48.7
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62
Sample 3
TPM: 73.9
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34
Sample 4
TPM: 21.2
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26
Sample 5
TPM: 68.9
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50
Sample 6
TPM: 65.4
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37
Sample 7
TPM: 50.3
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51
Sample 8
TPM: 55.5
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34
Sample 9
TPM: 47.9
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26
Sample 10
TPM: 53.4
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

9.9

GTEx sample id

RPKM

 

Testis

Testis
RPKM: 9.9
Samples: 172

Max RPKM: 17.1
Min RPKM: 2
Std RPKM: 3.1
Median RPKM: 10
GTEX-13VXU-0726-SM-5J2O7 17.1
GTEX-11NV4-1726-SM-5N9FC 16.6
GTEX-R55E-0726-SM-48FCZ 16.2
GTEX-13OVL-0426-SM-5IFG6 15.8
GTEX-111VG-1926-SM-5GIDO 15.7
GTEX-XBEC-0126-SM-4GIDT 15.5
GTEX-XQ3S-2726-SM-4BOP2 15.2
GTEX-WK11-0326-SM-4OOS6 15.0
GTEX-11ZUS-2726-SM-5FQUA 14.7
GTEX-Y111-2426-SM-4TT23 14.7
GTEX-S7PM-0626-SM-4AD4Q 14.6
GTEX-139TT-2226-SM-5LZWO 14.5
GTEX-OOBK-2126-SM-3LK5T 14.5
GTEX-139TS-1726-SM-5IJG5 14.4
GTEX-REY6-0126-SM-48FDT 14.3
GTEX-11WQC-2326-SM-5EQKE 13.9
GTEX-14ABY-0626-SM-5Q5C9 13.9
GTEX-WZTO-0326-SM-4PQYZ 13.7
GTEX-ZTSS-1526-SM-51MTC 13.7
GTEX-ZYT6-2726-SM-5GICP 13.7
GTEX-13N1W-2626-SM-5IJEP 13.6
GTEX-OXRL-2126-SM-3NM98 13.5
GTEX-11LCK-2326-SM-5HL53 13.4
GTEX-144GM-0426-SM-5Q5C8 13.4
GTEX-QEG4-0126-SM-48TZE 13.2
GTEX-13FHP-2826-SM-5IJFW 13.1
GTEX-YEC3-1726-SM-5IFIK 13.1
GTEX-117YW-1526-SM-5EGGP 13.0
GTEX-132QS-1226-SM-5P9GD 13.0
GTEX-ZDYS-1326-SM-5IJFF 13.0
GTEX-11OF3-1826-SM-5987N 12.9
GTEX-13112-0226-SM-5P9IV 12.9
GTEX-V1D1-2126-SM-4JBH4 12.9
GTEX-12ZZY-0126-SM-5LZV2 12.8
GTEX-13FLW-2126-SM-5N9FD 12.8
GTEX-145MO-0126-SM-5S2QU 12.8
GTEX-14753-0626-SM-5Q5CY 12.8
GTEX-ZQUD-2026-SM-51MSM 12.8
GTEX-12WSH-0326-SM-5GCNH 12.7
GTEX-144GL-0726-SM-5LU4P 12.7
GTEX-145MH-2326-SM-5O9AW 12.7
GTEX-11NUK-2626-SM-5A5MB 12.4
GTEX-XGQ4-2026-SM-4AT6G 12.4
GTEX-T6MN-2026-SM-4DM7L 12.3
GTEX-11GS4-2026-SM-5N9CP 12.2
GTEX-ZYFC-0126-SM-5GIEH 12.2
GTEX-N7MS-0126-SM-3TW8O 12.1
GTEX-1212Z-0326-SM-5FQSJ 12.0
GTEX-RN64-2326-SM-48FDW 12.0
GTEX-12C56-1426-SM-5FQSW 11.9
GTEX-Z93S-1726-SM-5HL8G 11.9
GTEX-ZV7C-2026-SM-5NQ8F 11.9
GTEX-ZVTK-0126-SM-57WDG 11.9
GTEX-QLQW-1026-SM-447A9 11.8
GTEX-13NZA-2526-SM-5IJFX 11.7
GTEX-X261-2326-SM-4PQYU 11.7
GTEX-XLM4-1526-SM-4AT6D 11.7
GTEX-11EQ9-1926-SM-5PNVV 11.5
GTEX-12WSI-2126-SM-5GCMV 11.5
GTEX-Q2AI-1226-SM-48U14 11.5
GTEX-WVLH-2626-SM-4MVNV 11.5
GTEX-11NSD-1026-SM-5N9BE 11.4
GTEX-TKQ2-1526-SM-4DXUN 11.3
GTEX-ZAB5-2426-SM-5CVMW 11.3
GTEX-11DXZ-2126-SM-59881 11.2
GTEX-147JS-0126-SM-5S2TW 11.1
GTEX-SNMC-1026-SM-4DM7K 11.1
GTEX-X5EB-2026-SM-4E3KA 11.1
GTEX-12696-0226-SM-5EGL3 11.0
GTEX-ZT9W-2226-SM-57WFU 11.0
GTEX-117XS-2026-SM-5GID1 10.8
GTEX-S95S-1126-SM-4B64E 10.7
GTEX-OIZH-2126-SM-3NB1P 10.6
GTEX-RM2N-1326-SM-48FCW 10.6
GTEX-U3ZH-1526-SM-4DXV1 10.6
GTEX-R55C-1426-SM-48FED 10.5
GTEX-TKQ1-0926-SM-4DXU2 10.5
GTEX-Y5V6-1726-SM-4VDSZ 10.5
GTEX-ZPU1-2126-SM-57WED 10.4
GTEX-12WSL-2326-SM-5DUXQ 10.3
GTEX-Q2AH-1526-SM-48TZG 10.3
GTEX-13O21-1226-SM-5J2MK 10.2
GTEX-111YS-2026-SM-5EGGL 10.1
GTEX-YEC4-1526-SM-4W1YU 10.1
GTEX-13NZB-2026-SM-5MR4M 10.0
GTEX-13O61-2026-SM-5J2M6 10.0
GTEX-OOBJ-2126-SM-3NB1N 10.0
GTEX-WHSB-2126-SM-4M1XF 9.9
GTEX-111FC-1926-SM-5GZYC 9.8
GTEX-13OW5-2526-SM-5L3I1 9.8
GTEX-U8T8-1126-SM-4DXUE 9.8
GTEX-WH7G-1926-SM-4LVMM 9.8
GTEX-YFCO-1726-SM-4W21S 9.8
GTEX-11TUW-2226-SM-5EQL9 9.7
GTEX-ZVZP-2226-SM-57WBF 9.7
GTEX-S7SE-0326-SM-4AT5Q 9.6
GTEX-UPJH-0126-SM-4IHLL 9.5
GTEX-13OVH-0726-SM-5N9BU 9.4
GTEX-RWSA-2426-SM-47JXR 9.4
GTEX-11EI6-2226-SM-5EGJM 9.3
GTEX-U4B1-1526-SM-4DXSL 9.3
GTEX-YF7O-2026-SM-4W1YE 9.3
GTEX-ZZ64-1126-SM-5GZXY 9.3
GTEX-T8EM-0126-SM-4DM5R 9.2
GTEX-U3ZM-1626-SM-4DXSK 9.2
GTEX-X3Y1-2626-SM-4PQZI 9.1
GTEX-XMK1-2026-SM-4B65K 9.1
GTEX-131XE-0426-SM-5IJF4 8.9
GTEX-S33H-0126-SM-4AD62 8.9
GTEX-YJ89-0626-SM-4TT3Z 8.9
GTEX-ZA64-1626-SM-5CVME 8.9
GTEX-OHPM-2126-SM-3LK75 8.8
GTEX-S3XE-1526-SM-4AD5A 8.8
GTEX-SNOS-1126-SM-4DM67 8.8
GTEX-139T6-1226-SM-5IFFC 8.7
GTEX-V955-1926-SM-4KL1L 8.7
GTEX-13N2G-0126-SM-5N9DV 8.6
GTEX-XAJ8-1326-SM-47JYT 8.6
GTEX-11P82-1526-SM-5BC5M 8.5
GTEX-QMRM-1526-SM-4R1K6 8.4
GTEX-RUSQ-2126-SM-47JXK 8.4
GTEX-13111-1526-SM-5EGJX 8.2
GTEX-T5JC-0726-SM-4DM55 8.2
GTEX-11O72-0726-SM-5P9GO 8.1
GTEX-ZUA1-2726-SM-59HLJ 8.1
GTEX-13NYB-2226-SM-5MR58 8.0
GTEX-QEG5-0126-SM-4R1JR 8.0
GTEX-QV31-1126-SM-4R1K4 8.0
GTEX-SUCS-1326-SM-4DM5T 8.0
GTEX-U8XE-0126-SM-4E3I3 8.0
GTEX-11EQ8-1426-SM-5EGJR 7.8
GTEX-P4QS-2126-SM-3NMCF 7.8
GTEX-S4Q7-1226-SM-4AD5I 7.7
GTEX-XBED-2026-SM-4AT5D 7.7
GTEX-ZTX8-1126-SM-51MRM 7.6
GTEX-13O1R-0726-SM-5IJEI 7.5
GTEX-14A6H-2326-SM-5Q5B5 7.3
GTEX-11ONC-2226-SM-5HL6D 7.2
GTEX-13OW6-0126-SM-5IJGM 7.2
GTEX-QLQ7-1426-SM-4R1JX 7.2
GTEX-111CU-1726-SM-5EGHM 7.1
GTEX-12WSM-1326-SM-5GCP9 7.1
GTEX-R55D-0126-SM-48FEL 6.9
GTEX-145LT-0426-SM-5LUAP 6.8
GTEX-WFG8-1926-SM-4LVM1 6.7
GTEX-WOFM-1126-SM-4OOSB 6.7
GTEX-PW2O-1426-SM-48TCD 6.6
GTEX-VJYA-1426-SM-4KL1Y 6.5
GTEX-ZT9X-1426-SM-5DUX1 6.5
GTEX-YB5E-1926-SM-5IFIG 6.3
GTEX-11P7K-1026-SM-5HL6Y 6.2
GTEX-1399R-1626-SM-5P9GG 6.2
GTEX-144GN-1626-SM-5Q5BU 6.1
GTEX-ZDTT-2026-SM-5K7TY 5.9
GTEX-XPT6-1626-SM-4B655 5.7
GTEX-O5YT-2126-SM-3MJGD 5.4
GTEX-OIZI-0126-SM-3NB13 5.4
GTEX-QV44-1726-SM-4R1KG 5.4
GTEX-147F4-0626-SM-5LUAK 5.3
GTEX-NFK9-0126-SM-3LK5H 4.8
GTEX-11TT1-2226-SM-5GU6B 4.7
GTEX-P4QR-0226-SM-3NMCH 4.6
GTEX-ZAB4-0126-SM-5CVMG 4.4
GTEX-Y8E4-2226-SM-5LU94 4.1
GTEX-WFON-2026-SM-4LVMW 3.5
GTEX-Y9LG-1726-SM-4VBQE 3.5
GTEX-13FTW-1326-SM-5LZZD 3.4
GTEX-PLZ5-1526-SM-3P5ZX 3.4
GTEX-XPVG-2226-SM-4B65U 3.3
GTEX-1339X-1926-SM-5PNVP 2.8
GTEX-11WQK-2826-SM-5EQKH 2.4
GTEX-1399Q-2826-SM-5IJEZ 2.0
Show all

TESTIS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

12.5

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 12.5
FF:10096-102C6 14-64 years, male 18.0
FF:10026-101D8 34,53,86 years, male 7.0

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