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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 48.7
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 73.9
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 21.2
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 68.9
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 65.4
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 50.3
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 55.5
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 47.9
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 53.4
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 17.1
Min RPKM: 2
Std RPKM: 3.1
Median RPKM: 10
GTEX-13VXU-0726-SM-5J2O7
17.1
GTEX-11NV4-1726-SM-5N9FC
16.6
GTEX-R55E-0726-SM-48FCZ
16.2
GTEX-13OVL-0426-SM-5IFG6
15.8
GTEX-111VG-1926-SM-5GIDO
15.7
GTEX-XBEC-0126-SM-4GIDT
15.5
GTEX-XQ3S-2726-SM-4BOP2
15.2
GTEX-WK11-0326-SM-4OOS6
15.0
GTEX-11ZUS-2726-SM-5FQUA
14.7
GTEX-Y111-2426-SM-4TT23
14.7
GTEX-S7PM-0626-SM-4AD4Q
14.6
GTEX-139TT-2226-SM-5LZWO
14.5
GTEX-OOBK-2126-SM-3LK5T
14.5
GTEX-139TS-1726-SM-5IJG5
14.4
GTEX-REY6-0126-SM-48FDT
14.3
GTEX-11WQC-2326-SM-5EQKE
13.9
GTEX-14ABY-0626-SM-5Q5C9
13.9
GTEX-WZTO-0326-SM-4PQYZ
13.7
GTEX-ZTSS-1526-SM-51MTC
13.7
GTEX-ZYT6-2726-SM-5GICP
13.7
GTEX-13N1W-2626-SM-5IJEP
13.6
GTEX-OXRL-2126-SM-3NM98
13.5
GTEX-11LCK-2326-SM-5HL53
13.4
GTEX-144GM-0426-SM-5Q5C8
13.4
GTEX-QEG4-0126-SM-48TZE
13.2
GTEX-13FHP-2826-SM-5IJFW
13.1
GTEX-YEC3-1726-SM-5IFIK
13.1
GTEX-117YW-1526-SM-5EGGP
13.0
GTEX-132QS-1226-SM-5P9GD
13.0
GTEX-ZDYS-1326-SM-5IJFF
13.0
GTEX-11OF3-1826-SM-5987N
12.9
GTEX-13112-0226-SM-5P9IV
12.9
GTEX-V1D1-2126-SM-4JBH4
12.9
GTEX-12ZZY-0126-SM-5LZV2
12.8
GTEX-13FLW-2126-SM-5N9FD
12.8
GTEX-145MO-0126-SM-5S2QU
12.8
GTEX-14753-0626-SM-5Q5CY
12.8
GTEX-ZQUD-2026-SM-51MSM
12.8
GTEX-12WSH-0326-SM-5GCNH
12.7
GTEX-144GL-0726-SM-5LU4P
12.7
GTEX-145MH-2326-SM-5O9AW
12.7
GTEX-11NUK-2626-SM-5A5MB
12.4
GTEX-XGQ4-2026-SM-4AT6G
12.4
GTEX-T6MN-2026-SM-4DM7L
12.3
GTEX-11GS4-2026-SM-5N9CP
12.2
GTEX-ZYFC-0126-SM-5GIEH
12.2
GTEX-N7MS-0126-SM-3TW8O
12.1
GTEX-1212Z-0326-SM-5FQSJ
12.0
GTEX-RN64-2326-SM-48FDW
12.0
GTEX-12C56-1426-SM-5FQSW
11.9
GTEX-Z93S-1726-SM-5HL8G
11.9
GTEX-ZV7C-2026-SM-5NQ8F
11.9
GTEX-ZVTK-0126-SM-57WDG
11.9
GTEX-QLQW-1026-SM-447A9
11.8
GTEX-13NZA-2526-SM-5IJFX
11.7
GTEX-X261-2326-SM-4PQYU
11.7
GTEX-XLM4-1526-SM-4AT6D
11.7
GTEX-11EQ9-1926-SM-5PNVV
11.5
GTEX-12WSI-2126-SM-5GCMV
11.5
GTEX-Q2AI-1226-SM-48U14
11.5
GTEX-WVLH-2626-SM-4MVNV
11.5
GTEX-11NSD-1026-SM-5N9BE
11.4
GTEX-TKQ2-1526-SM-4DXUN
11.3
GTEX-ZAB5-2426-SM-5CVMW
11.3
GTEX-11DXZ-2126-SM-59881
11.2
GTEX-147JS-0126-SM-5S2TW
11.1
GTEX-SNMC-1026-SM-4DM7K
11.1
GTEX-X5EB-2026-SM-4E3KA
11.1
GTEX-12696-0226-SM-5EGL3
11.0
GTEX-ZT9W-2226-SM-57WFU
11.0
GTEX-117XS-2026-SM-5GID1
10.8
GTEX-S95S-1126-SM-4B64E
10.7
GTEX-OIZH-2126-SM-3NB1P
10.6
GTEX-RM2N-1326-SM-48FCW
10.6
GTEX-U3ZH-1526-SM-4DXV1
10.6
GTEX-R55C-1426-SM-48FED
10.5
GTEX-TKQ1-0926-SM-4DXU2
10.5
GTEX-Y5V6-1726-SM-4VDSZ
10.5
GTEX-ZPU1-2126-SM-57WED
10.4
GTEX-12WSL-2326-SM-5DUXQ
10.3
GTEX-Q2AH-1526-SM-48TZG
10.3
GTEX-13O21-1226-SM-5J2MK
10.2
GTEX-111YS-2026-SM-5EGGL
10.1
GTEX-YEC4-1526-SM-4W1YU
10.1
GTEX-13NZB-2026-SM-5MR4M
10.0
GTEX-13O61-2026-SM-5J2M6
10.0
GTEX-OOBJ-2126-SM-3NB1N
10.0
GTEX-WHSB-2126-SM-4M1XF
9.9
GTEX-111FC-1926-SM-5GZYC
9.8
GTEX-13OW5-2526-SM-5L3I1
9.8
GTEX-U8T8-1126-SM-4DXUE
9.8
GTEX-WH7G-1926-SM-4LVMM
9.8
GTEX-YFCO-1726-SM-4W21S
9.8
GTEX-11TUW-2226-SM-5EQL9
9.7
GTEX-ZVZP-2226-SM-57WBF
9.7
GTEX-S7SE-0326-SM-4AT5Q
9.6
GTEX-UPJH-0126-SM-4IHLL
9.5
GTEX-13OVH-0726-SM-5N9BU
9.4
GTEX-RWSA-2426-SM-47JXR
9.4
GTEX-11EI6-2226-SM-5EGJM
9.3
GTEX-U4B1-1526-SM-4DXSL
9.3
GTEX-YF7O-2026-SM-4W1YE
9.3
GTEX-ZZ64-1126-SM-5GZXY
9.3
GTEX-T8EM-0126-SM-4DM5R
9.2
GTEX-U3ZM-1626-SM-4DXSK
9.2
GTEX-X3Y1-2626-SM-4PQZI
9.1
GTEX-XMK1-2026-SM-4B65K
9.1
GTEX-131XE-0426-SM-5IJF4
8.9
GTEX-S33H-0126-SM-4AD62
8.9
GTEX-YJ89-0626-SM-4TT3Z
8.9
GTEX-ZA64-1626-SM-5CVME
8.9
GTEX-OHPM-2126-SM-3LK75
8.8
GTEX-S3XE-1526-SM-4AD5A
8.8
GTEX-SNOS-1126-SM-4DM67
8.8
GTEX-139T6-1226-SM-5IFFC
8.7
GTEX-V955-1926-SM-4KL1L
8.7
GTEX-13N2G-0126-SM-5N9DV
8.6
GTEX-XAJ8-1326-SM-47JYT
8.6
GTEX-11P82-1526-SM-5BC5M
8.5
GTEX-QMRM-1526-SM-4R1K6
8.4
GTEX-RUSQ-2126-SM-47JXK
8.4
GTEX-13111-1526-SM-5EGJX
8.2
GTEX-T5JC-0726-SM-4DM55
8.2
GTEX-11O72-0726-SM-5P9GO
8.1
GTEX-ZUA1-2726-SM-59HLJ
8.1
GTEX-13NYB-2226-SM-5MR58
8.0
GTEX-QEG5-0126-SM-4R1JR
8.0
GTEX-QV31-1126-SM-4R1K4
8.0
GTEX-SUCS-1326-SM-4DM5T
8.0
GTEX-U8XE-0126-SM-4E3I3
8.0
GTEX-11EQ8-1426-SM-5EGJR
7.8
GTEX-P4QS-2126-SM-3NMCF
7.8
GTEX-S4Q7-1226-SM-4AD5I
7.7
GTEX-XBED-2026-SM-4AT5D
7.7
GTEX-ZTX8-1126-SM-51MRM
7.6
GTEX-13O1R-0726-SM-5IJEI
7.5
GTEX-14A6H-2326-SM-5Q5B5
7.3
GTEX-11ONC-2226-SM-5HL6D
7.2
GTEX-13OW6-0126-SM-5IJGM
7.2
GTEX-QLQ7-1426-SM-4R1JX
7.2
GTEX-111CU-1726-SM-5EGHM
7.1
GTEX-12WSM-1326-SM-5GCP9
7.1
GTEX-R55D-0126-SM-48FEL
6.9
GTEX-145LT-0426-SM-5LUAP
6.8
GTEX-WFG8-1926-SM-4LVM1
6.7
GTEX-WOFM-1126-SM-4OOSB
6.7
GTEX-PW2O-1426-SM-48TCD
6.6
GTEX-VJYA-1426-SM-4KL1Y
6.5
GTEX-ZT9X-1426-SM-5DUX1
6.5
GTEX-YB5E-1926-SM-5IFIG
6.3
GTEX-11P7K-1026-SM-5HL6Y
6.2
GTEX-1399R-1626-SM-5P9GG
6.2
GTEX-144GN-1626-SM-5Q5BU
6.1
GTEX-ZDTT-2026-SM-5K7TY
5.9
GTEX-XPT6-1626-SM-4B655
5.7
GTEX-O5YT-2126-SM-3MJGD
5.4
GTEX-OIZI-0126-SM-3NB13
5.4
GTEX-QV44-1726-SM-4R1KG
5.4
GTEX-147F4-0626-SM-5LUAK
5.3
GTEX-NFK9-0126-SM-3LK5H
4.8
GTEX-11TT1-2226-SM-5GU6B
4.7
GTEX-P4QR-0226-SM-3NMCH
4.6
GTEX-ZAB4-0126-SM-5CVMG
4.4
GTEX-Y8E4-2226-SM-5LU94
4.1
GTEX-WFON-2026-SM-4LVMW
3.5
GTEX-Y9LG-1726-SM-4VBQE
3.5
GTEX-13FTW-1326-SM-5LZZD
3.4
GTEX-PLZ5-1526-SM-3P5ZX
3.4
GTEX-XPVG-2226-SM-4B65U
3.3
GTEX-1339X-1926-SM-5PNVP
2.8
GTEX-11WQK-2826-SM-5EQKH
2.4
GTEX-1399Q-2826-SM-5IJEZ
2.0
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.