Cell atlas - CFAP47 - The Human Protein Atlas

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CFAP47

TISSUE

CELL

CANCER

CELL ATLAS RNA EXPRESSION

GENE/PROTEIN

Dictionary

Human cell

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GENERAL INFORMATION
Gene name	CFAP47
Gene description	Cilia and flagella associated protein 47
Protein class	Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	5
	SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION
Summary
RNA cell category	Cell line enhanced (U-266/70, Karpas-707)
Protein evidence	Evidence at transcript level
Main location	Not available

DATA RELIABILITY
Reliability score	Pending cell analysis.

ASSAYS

RNA EXPRESSION OVERVIEW
RNA cell line category: Cell line enhanced (U-266/70, Karpas-707) Organ Origin Category Expression Alphabetical Cell lines sorted after organ of phenotypic resemblance. Cell lines sorted after biological source for establishment. Cell lines sorted after the cell line category according to Cellosaurus. Cell lines sorted on descending RNA expression. Cell lines sorted alphabetically.

GENE INFORMATION
Gene name	CFAP47 (HGNC Symbol)
Synonyms	CHDC2, CXorf22, CXorf30, CXorf59, FLJ36601, MGC34831, RP13-11B7.1
Description	Cilia and flagella associated protein 47 (HGNC Symbol)
Entrez gene summary	While this gene is well-supported by transcript data, no functional information on its protein product is currently available. [provided by RefSeq, Dec 2009]
Chromosome	X
Cytoband	p21.1
Chromosome location (bp)	35919734 - 36385319
Protein evidence	Evidence at transcript level (all genes)
Ensembl	ENSG00000165164 (version 83.38)
Entrez gene	286464
UniProt
neXtProt
Antibodypedia	CFAP47 antibodies

PROTEIN BROWSER

CFAP47-002	CFAP47-003	CFAP47-006	CFAP47-201	CFAP47-202

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
CFAP47-002 ENSP00000367922 ENST00000378653	B1ARL5 [Direct mapping] Uncharacterized protein CXorf22 Show all	SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Show all	GO:0005515 [protein binding] Show all	3187 aa 361.6 kDa	No	0
CFAP47-003 ENSP00000297866 ENST00000297866		MEMSAT3 predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins Predicted intracellular proteins Show all		976 aa 110.4 kDa	No	0
CFAP47-006 ENSP00000485710 ENST00000630521	A0A0D9SEI5 [Direct mapping] Protein CFAP47 Show all	Predicted intracellular proteins Show all		90 aa 10.4 kDa	No	0
CFAP47-201 ENSP00000324767 ENST00000313548		Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005515 [protein binding] Show all	502 aa 58.1 kDa	No	1
CFAP47-202 ENSP00000367926 ENST00000378657		Predicted intracellular proteins Show all		633 aa 72 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.