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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:21.9TPM
GTEx:4.6RPKM
FANTOM5:18.4Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Not detected
Glandular cells:Not detected
Peripheral nerve/ganglion:Not detected
 

Antibody staining

Antibody HPA051227

  

Endothelial cells

 Not detected  

Glandular cells

 Not detected  

Peripheral nerve/ganglion

 Not detected  
 
 

COLON - HPA RNA-seq

Average TPM

21.9
overview Male, age 54
Sample 1
TPM: 14.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 22.3
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 10.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 6.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 46.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 16.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 25.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 23.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 38.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 13.0
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 35.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 14.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 16.0
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

4.6

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 3.4
Samples: 149

Max RPKM: 11.7
Min RPKM: 0.2
Std RPKM: 2.1
Median RPKM: 3.1
GTEX-ZV6S-1126-SM-57WE9 11.7
GTEX-YEC3-2026-SM-4WWFL 11.6
GTEX-Y114-1626-SM-4TT7I 9.6
GTEX-1122O-1426-SM-5H11R 8.8
GTEX-111CU-1226-SM-5EGIN 8.7
GTEX-WFON-1326-SM-4LVMN 8.7
GTEX-ZQG8-2426-SM-57WEE 7.8
GTEX-WHPG-1626-SM-4M1ZL 7.7
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 5.5
Samples: 196

Max RPKM: 24.9
Min RPKM: 0.2
Std RPKM: 3.5
Median RPKM: 4.6
GTEX-ZXES-1626-SM-5NQ7L 24.9
GTEX-1339X-1626-SM-5IJDN 21.5
GTEX-11EM3-1526-SM-5A5KN 17.7
GTEX-ZV6S-1226-SM-59HLH 15.5
GTEX-12WSJ-1526-SM-5GCNI 15.4
GTEX-Q2AH-1226-SM-48TZL 14.9
GTEX-QLQ7-1126-SM-4R1KN 13.8
GTEX-XMK1-1726-SM-4B64Z 13.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

18.4

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 18.4
FF:10014-101C5 62,83,84 years, mixed 18.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.