Fields »
ABOUT
HELP
BLOG
TAF1D

GENERAL INFORMATION

Gene name

 TAF1D

Gene description

 TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa

Protein class

 Predicted intracellular proteins
Predicted membrane proteins

Predicted localization

 Intracellular,Membrane

Number of transcripts

 3
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Expressed in all

Protein evidence

 Evidence at protein level

Protein expression

 Cytoplasmic and membranous expression in several cell types.

DATA RELIABILITY

Data reliability
description

 Pending external verification.

Reliability score

 Uncertain based on 2 antibodies.
HPA055935 , HPA060385
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
Caudate
N/A
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Bronchus
N/A
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Vagina
N/A
Adipose & soft tissue
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

Skin

PROTEIN EXPRESSION OVERVIEW
Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

 TAF1D (HGNC Symbol)

Synonyms

 JOSD3, MGC5306, TAF(I)41

Description

 TATA box binding protein (TBP)-associated factor, RNA polymerase I, D, 41kDa (HGNC Symbol)

Entrez gene summary

 TAF1D is a member of the SL1 complex, which includes TBP (MIM 600075) and TAF1A (MIM 604903), TAF1B (MIM 604904), and TAF1C (MIM 604905), and plays a role in RNA polymerase I transcription (Wang et al., 2004 [PubMed 15520167]; Gorski et al., 2007 [PubMed 17318177]).[supplied by OMIM, Jun 2009]

Chromosome

 11

Cytoband

 q21

Chromosome location (bp)

 93729948 - 93784391

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000166012 (version 83.38)

Entrez gene

 79101

UniProt

 Q9H5J8 (UniProt - Evidence at protein level)

neXtProt

 NX_Q9H5J8

Antibodypedia

 TAF1D antibodies

PROTEIN BROWSER
TAF1D-001
TAF1D-007
TAF1D-024

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
TAF1D-001
ENSP00000410409
ENST00000448108
Q9H5J8 [Direct mapping]
TATA box-binding protein-associated factor RNA polymerase I subunit D
A0A024R3A9 [Target identity:100%; Query identity:100%]
Josephin domain containing 3, isoform CRA_a
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000183 [chromatin silencing at rDNA]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005668 [RNA polymerase transcription factor SL1 complex]
GO:0005815 [microtubule organizing center]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006360 [transcription from RNA polymerase I promoter]
GO:0006361 [transcription initiation from RNA polymerase I promoter]
GO:0006362 [transcription elongation from RNA polymerase I promoter]
GO:0006363 [termination of RNA polymerase I transcription]
GO:0010467 [gene expression]
GO:0040029 [regulation of gene expression, epigenetic]
GO:0045814 [negative regulation of gene expression, epigenetic]
Show all
 278 aa
32.1 kDa 		No 0
TAF1D-007
ENSP00000431570
ENST00000532455
H0YCH2 [Direct mapping]
TATA box-binding protein-associated factor RNA polymerase I subunit D
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
 110 aa
12.1 kDa 		No 1
TAF1D-024
ENSP00000432852
ENST00000527690
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
 8 aa
0.9 kDa 		No 0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.