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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:52.6TPM
GTEx:25.9RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glial cells:Medium
Neuronal cells:High
Neuropil:Medium
 

Antibody staining

Antibody HPA004125

 

Antibody CAB017097

 

Endothelial cells

Medium   Medium  

Glial cells

Not detected   Medium  

Neuronal cells

Medium   High  

Neuropil

Medium   Medium  
   
   
   

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

52.6

N/A Male, age 5
Sample 1
TPM: 48.9
overview Female, age 40
Sample 2
TPM: 51.9
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 56.9
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

25.9

GTEx sample id

RPKM

23.230.433.713.444.405101520253035404550
 
23.230.433.713.444.405101520253035404550

Brain - Cortex

Brain - Cortex
RPKM: 29.1
Samples: 114

Max RPKM: 50.9
Min RPKM: 13.4
Std RPKM: 7.4
Median RPKM: 30.5
GTEX-11OF3-2926-SM-5HL78 50.9
GTEX-13NYS-3126-SM-5KLYV 49.9
GTEX-X585-3026-SM-46MWF 44.4
GTEX-13FXS-3126-SM-5J2NN 41.9
GTEX-T6MN-2626-SM-32PMQ 40.9
GTEX-UTHO-3026-SM-3GAFB 40.9
GTEX-X4XX-3026-SM-3NMB2 39.6
GTEX-RNOR-2326-SM-2TF4I 39.1
GTEX-WL46-2926-SM-3LK82 37.7
GTEX-13VXU-2926-SM-5LU5C 37.5
GTEX-YFC4-3126-SM-5PNV6 37.5
GTEX-14BMV-3026-SM-5S2PQ 37.4
GTEX-13OW6-3026-SM-5J2MI 37.1
GTEX-145MF-2726-SM-5O995 36.8
GTEX-12ZZY-3026-SM-5GCOU 36.7
GTEX-ZYFD-3026-SM-5E44C 36.3
GTEX-PVOW-2526-SM-2XCF7 36.2
GTEX-ZAJG-3126-SM-5HL9J 36.2
GTEX-WHSE-3026-SM-3P5ZH 36.1
GTEX-T5JC-2426-SM-3NMDB 35.5
GTEX-1313W-3126-SM-5LZUI 35.2
GTEX-NPJ8-1526-SM-2D7VU 35.1
GTEX-117XS-3026-SM-5N9CA 35.0
GTEX-11GSO-2926-SM-5HL73 34.9
GTEX-ZUA1-3026-SM-59HJC 34.8
GTEX-14ASI-3026-SM-5S2PN 34.6
GTEX-1192X-3126-SM-5N9BY 34.5
GTEX-T2IS-3026-SM-32QPM 34.5
GTEX-145MH-3026-SM-5Q5DZ 33.8
GTEX-13NYC-2826-SM-5K7WR 33.3
GTEX-12WSC-3026-SM-5GCNF 33.1
GTEX-11DXY-3226-SM-5GIDE 33.0
GTEX-13OVH-3026-SM-5MR4N 33.0
GTEX-12ZZX-2926-SM-5GCOQ 32.9
GTEX-XOTO-3026-SM-4B65M 32.9
GTEX-13FHO-3026-SM-5J1O9 32.7
GTEX-12126-1026-SM-5P9JJ 32.6
GTEX-13SLX-3126-SM-5S2Q5 32.6
GTEX-12WSH-3026-SM-5CVNI 32.5
GTEX-144FL-3026-SM-5O99C 32.3
GTEX-WVLH-3026-SM-3MJG9 32.3
GTEX-Q2AG-2926-SM-2HMJ3 32.2
GTEX-WZTO-2926-SM-3NM9I 32.2
GTEX-XLM4-3026-SM-4AT6L 31.9
GTEX-WWYW-3126-SM-3NB39 31.8
GTEX-11NUK-2926-SM-5A5MD 31.7
GTEX-13NYB-3026-SM-5IJD7 31.7
GTEX-11PRG-2926-SM-5987A 31.5
GTEX-11ZUS-2926-SM-5FQSL 31.4
GTEX-13O3Q-2926-SM-5KM45 31.4
GTEX-13FLW-1426-SM-5K7YE 30.9
GTEX-ZAK1-3026-SM-5S2MJ 30.9
GTEX-QMR6-1426-SM-32PLA 30.7
GTEX-11OC5-0726-SM-5P9JK 30.5
GTEX-13IVO-2926-SM-5L3CZ 30.5
GTEX-144GL-3026-SM-5Q5CW 30.5
GTEX-TSE9-3026-SM-3DB76 30.5
GTEX-111FC-3126-SM-5GZZ2 30.4
GTEX-QDT8-2926-SM-32PKC 30.4
GTEX-13OW8-2826-SM-5L3GC 30.3
GTEX-11DXW-1126-SM-5H12Q 29.7
GTEX-QVJO-1426-SM-2S1QY 29.7
GTEX-131YS-3126-SM-5KLYT 29.6
GTEX-132Q8-3026-SM-5PNVG 29.5
GTEX-YJ89-3026-SM-5IFJI 29.1
GTEX-Z93S-2926-SM-57WB9 29.1
GTEX-145LS-3126-SM-5Q5BY 29.0
GTEX-11GS4-3126-SM-5A5LH 28.9
GTEX-12ZZZ-3026-SM-5BC67 28.6
GTEX-R55F-1326-SM-5S2V4 28.3
GTEX-11ONC-2926-SM-5P9JM 27.6
GTEX-ZZPT-3026-SM-5GZXH 27.1
GTEX-Y111-2726-SM-4TT3N 26.9
GTEX-1128S-2726-SM-5H12C 26.4
GTEX-11WQK-3026-SM-5EQL6 26.0
GTEX-13FHP-3026-SM-5IJBS 25.9
GTEX-13O3O-3126-SM-5KM3H 25.9
GTEX-1399T-3026-SM-5KLZC 25.8
GTEX-ZVT3-3026-SM-5E43N 25.4
GTEX-145MG-3026-SM-5RQJA 25.3
GTEX-QVUS-2826-SM-3GADB 25.0
GTEX-13OVJ-2826-SM-5L3GW 24.9
GTEX-OXRN-2426-SM-2I5EQ 24.9
GTEX-14A5I-2926-SM-5Q5CQ 24.7
GTEX-13PVQ-3026-SM-5SI93 23.9
GTEX-Y8DK-0826-SM-4TT3T 23.0
GTEX-13G51-3026-SM-5IJB8 22.6
GTEX-13X6J-3026-SM-5Q5CU 22.5
GTEX-RU72-3026-SM-5SI7Y 22.0
GTEX-139T8-1026-SM-5J2MC 21.6
GTEX-13S7M-3126-SM-5RQJQ 21.5
GTEX-13PL6-3126-SM-5LUAR 21.4
GTEX-13JUV-2926-SM-5LZX7 21.2
GTEX-13QIC-2926-SM-5J2NF 21.2
GTEX-N7MT-1126-SM-5SI7V 21.1
GTEX-1117F-3226-SM-5N9CT 21.0
GTEX-12WSD-3126-SM-5HL7P 20.7
GTEX-11EMC-3226-SM-5EGKW 20.6
GTEX-11O72-2926-SM-5BC4V 20.4
GTEX-11EI6-3026-SM-5GZZO 19.5
GTEX-12ZZW-2926-SM-5LZUP 18.9
GTEX-13X6K-2926-SM-5Q5D5 18.8
GTEX-NPJ7-2726-SM-2I3FT 18.5
GTEX-131XW-3126-SM-5LZUC 18.1
GTEX-13OW7-3026-SM-5L3GY 18.0
GTEX-ZE7O-3126-SM-5HL5X 17.3
GTEX-13JVG-3126-SM-5L3FH 17.2
GTEX-147GR-3026-SM-5S2ML 16.8
GTEX-12WSA-2926-SM-5EQ4D 16.6
GTEX-11GSP-3226-SM-5986O 14.9
GTEX-PWO3-0926-SM-2I5EY 14.9
GTEX-11TTK-2926-SM-5PNYP 14.7
GTEX-1445S-3026-SM-5O9BR 14.3
GTEX-11NV4-2126-SM-5N9DS 13.4
Show all
17.123.328.56.440.40510152025303540
 
17.123.328.56.440.40510152025303540

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 22.6
Samples: 108

Max RPKM: 40.4
Min RPKM: 6.4
Std RPKM: 7.7
Median RPKM: 23.2
GTEX-X585-0011-R10A-SM-46MUY 40.4
GTEX-13N2G-0011-R10a-SM-5MR34 39.7
GTEX-T6MN-0011-R10A-SM-32QP7 35.3
GTEX-12ZZX-0011-R10b-SM-5DUWK 34.1
GTEX-NL3H-0011-R10A-SM-2I3E9 33.7
GTEX-145MH-0011-R10b-SM-5PNUK 33.6
GTEX-WVLH-0011-R10A-SM-3MJFM 33.4
GTEX-X4EP-0011-R10B-SM-4QASJ 33.4
GTEX-T5JC-0011-R10A-SM-32PM2 33.0
GTEX-13NYS-0011-R10a-SM-5MR4S 32.9
GTEX-WL46-0011-R10A-SM-3MJFQ 32.6
GTEX-S7SE-0011-R10A-SM-2XCDF 32.3
GTEX-12WSF-0011-R10a-SM-5LZVH 32.1
GTEX-WZTO-0011-R10B-SM-4E3KB 32.1
GTEX-X4XX-0011-R10B-SM-46MWO 31.7
GTEX-Q2AG-0011-R10A-SM-2HMLA 31.5
GTEX-14ASI-0011-R10b-SM-5S2VZ 31.1
GTEX-13RTJ-0011-R10b-SM-5O9CW 30.8
GTEX-1313W-0011-R10b-SM-5DUXA 30.7
GTEX-YFC4-0011-R10a-SM-4SOK5 30.5
GTEX-13O3Q-0011-R10b-SM-5KM39 29.9
GTEX-12WSE-0011-R10b-SM-5P9JV 29.6
GTEX-XLM4-0011-R10A-SM-4AT5P 29.6
GTEX-131XH-0011-R10a-SM-5EGLJ 29.5
GTEX-NPJ8-0011-R10A-SM-2YUMO 29.2
GTEX-13FHO-0011-R10b-SM-5J2MM 28.7
GTEX-13X6K-0011-R10a-SM-5P9JR 28.5
GTEX-ZF28-0011-R10a-SM-4WWEH 28.5
GTEX-131YS-0011-R10b-SM-5EQ5N 27.9
GTEX-WWYW-0011-R10A-SM-3NB35 27.9
GTEX-13QJC-0011-R10a-SM-5SI63 27.5
GTEX-Y8DK-0011-R10A-SM-4SOK1 27.5
GTEX-12WSM-0011-R10a-SM-5DUWV 27.3
GTEX-N7MS-0011-R10A-SM-2HMJK 27.1
GTEX-QDT8-0011-R10A-SM-32PKG 27.1
GTEX-QVJO-0011-R10A-SM-2S1QJ 27.1
GTEX-13N1W-0011-R10b-SM-5MR4H 27.0
GTEX-13OVL-0011-R10a-SM-5L3GS 26.2
GTEX-13CZV-0011-R10b-SM-5LZYD 25.7
GTEX-13FXS-0011-R10a-SM-5J2MA 25.6
GTEX-NPJ7-0011-R10A-SM-2I3E5 25.6
GTEX-145MG-0011-R10a-SM-5PNWG 25.4
GTEX-132Q8-0011-R10b-SM-5DUWZ 25.3
GTEX-13NYB-0011-R10a-SM-5KM43 25.3
GTEX-13QIC-0011-R10a-SM-5O9C7 25.0
GTEX-12WSC-0011-R10a-SM-5GU57 24.9
GTEX-13SLX-0011-R10a-SM-5P9HV 24.7
GTEX-QVUS-0011-R10A-SM-3GIK3 24.7
GTEX-11H98-0011-R10b-SM-5NQ98 24.4
GTEX-12WSH-0011-R10a-SM-5LZUS 23.7
GTEX-13FLW-0011-R10b-SM-5LZZF 23.4
GTEX-13OW7-0011-R10a-SM-5L3H3 23.4
GTEX-13OW6-0011-R10a-SM-5L3HE 23.3
GTEX-14BIL-0011-R10a-SM-5SI75 23.3
GTEX-145LS-0011-R10a-SM-5PNUQ 23.2
GTEX-12ZZZ-0011-R10a-SM-5P9HC 22.6
GTEX-13S7M-0011-R10b-SM-5PNZB 22.5
GTEX-13X6J-0011-R10b-SM-5PNWA 22.5
GTEX-YJ89-0011-R10a-SM-4SOK9 22.5
GTEX-147GR-0011-R10b-SM-5S2UM 22.3
GTEX-N7MT-0011-R10A-SM-2I3E1 22.2
GTEX-13OW8-0011-R10a-SM-5L3H6 22.0
GTEX-Z93S-0011-R10a-SM-4RGNM 21.7
GTEX-ZVZQ-0011-R10b-SM-51MRT 21.4
GTEX-13G51-0011-R10b-SM-5LZYF 21.0
GTEX-13OVJ-0011-R10b-SM-5L3HT 20.8
GTEX-ZUA1-0011-R10a-SM-51MT6 20.8
GTEX-QMR6-0011-R10A-SM-32PKO 20.6
GTEX-14BIN-0011-R10a-SM-5S2UA 20.5
GTEX-12ZZY-0011-R10b-SM-5HL7W 20.2
GTEX-ZAB4-0011-R10a-SM-4SOKH 19.7
GTEX-13JUV-0011-R10b-SM-5LZXR 19.6
GTEX-13X6I-0011-R10a-SM-5PNWI 19.5
GTEX-12126-0011-R10b-SM-5BC6T 19.1
GTEX-TSE9-0011-R10A-SM-3DB7O 19.0
GTEX-ZDXO-0011-R10a-SM-4WWD8 19.0
GTEX-13FLV-0011-R10b-SM-5LZZ2 18.7
GTEX-13O3O-0011-R10a-SM-5LUA9 18.2
GTEX-X261-0011-R10B-SM-4E3JT 18.1
GTEX-OXRN-0011-R10A-SM-2I5GC 17.8
GTEX-147F4-0011-R10b-SM-5S2WC 17.5
GTEX-NL4W-0011-R10A-SM-2I3DY 15.7
GTEX-P44H-0011-R10A-SM-2XCEK 15.5
GTEX-11WQK-0011-R10a-SM-5BC6R 15.2
GTEX-11ZUS-0011-R10b-SM-5BC79 15.2
GTEX-XMD1-0011-R10A-SM-4AT4A 14.9
GTEX-13FTZ-0011-R10b-SM-5KLZS 14.8
GTEX-11WQC-0011-R10a-SM-57WCT 14.3
GTEX-OXRO-0011-R10A-SM-2I5EH 14.1
GTEX-ZVT3-0011-R10b-SM-57WB6 14.1
GTEX-12WSA-0011-R10b-SM-5P9ET 13.8
GTEX-145LU-0011-R10a-SM-5PNWJ 13.7
GTEX-13IVO-0011-R10a-SM-5LZY3 13.5
GTEX-13SLW-0011-R10a-SM-5S2UI 13.3
GTEX-RVPU-0011-R10A-SM-2XCAH 13.3
GTEX-1445S-0011-R10a-SM-5PNWB 11.7
GTEX-ZXG5-0011-R10a-SM-57WDD 11.7
GTEX-11GSP-0011-R10a-SM-5NQ7J 11.0
GTEX-13NZA-0011-R10b-SM-5KM54 10.4
GTEX-12ZZW-0011-R10b-SM-5HL9X 10.3
GTEX-1477Z-0011-R10b-SM-5S2RF 9.8
GTEX-ZE7O-0011-R10a-SM-57WAZ 9.7
GTEX-12WSD-0011-R10b-SM-5GU79 8.8
GTEX-139TS-0011-R10a-SM-5K7TU 8.7
GTEX-13JVG-0011-R10b-SM-5KM2P 8.5
GTEX-ZV68-0011-R10a-SM-51MT7 8.3
GTEX-14753-0011-R10b-SM-5S2WE 7.9
GTEX-131XW-0011-R10a-SM-5DUVA 6.4
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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