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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:57.0TPM
GTEx:35.0RPKM
FANTOM5:78.9Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA036744

  

Antibody HPA036745

  

Antibody CAB033794

  

Endothelial cells

 Not detected   Medium   Medium  

Glandular cells

 Medium   High   High  

Peripheral nerve/ganglion

 Medium   Medium   Medium  
     
     

COLON - HPA RNA-seq

Average TPM

57.0
overview Male, age 54
Sample 1
TPM: 57.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 51.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 40.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 54.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 38.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 85.0
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 68.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 54.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 54.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 68.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 66.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 62.7
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 37.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

35.0

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 35.9
Samples: 149

Max RPKM: 69
Min RPKM: 15.4
Std RPKM: 8.8
Median RPKM: 35.2
GTEX-11I78-1326-SM-5PNY9 69.0
GTEX-13CF3-1326-SM-5LZXZ 64.6
GTEX-13FTW-2126-SM-5K7YG 61.7
GTEX-131XG-1526-SM-5GCNQ 60.4
GTEX-11TT1-0926-SM-5GU5M 58.7
GTEX-ZQG8-2426-SM-57WEE 55.3
GTEX-ZDTS-2726-SM-5L3E2 52.6
GTEX-ZV6S-1126-SM-57WE9 52.1
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 34.2
Samples: 196

Max RPKM: 63.8
Min RPKM: 12.7
Std RPKM: 6.7
Median RPKM: 33.8
GTEX-13FH7-1526-SM-5J2N6 63.8
GTEX-QDVN-1326-SM-48TZ3 55.3
GTEX-13W3W-2126-SM-5K7UX 53.3
GTEX-T5JW-1126-SM-4DM5V 50.9
GTEX-XAJ8-0426-SM-47JYJ 50.6
GTEX-QMRM-1226-SM-447C6 49.5
GTEX-111YS-1626-SM-5GZZ9 49.1
GTEX-131XG-1826-SM-5LZV4 47.7
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

78.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 78.9
FF:10014-101C5 62,83,84 years, mixed 78.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.