We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
TMED10
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:31.4RPKM
FANTOM5:136.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:High
 

Antibody staining

Antibody HPA047139

 

Antibody HPA050539

 

Antibody CAB034442

 

Antibody CAB037251

 

Glial cells

Low   Low   Not detected   Medium  

Neuronal cells

High   Not detected   High   High  
       
       
       

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

31.4

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 31.4
Samples: 117

Max RPKM: 54.9
Min RPKM: 12.6
Std RPKM: 8.3
Median RPKM: 30.1
GTEX-132Q8-0011-R5a-SM-5IJDM 54.9
GTEX-12WSB-0011-R5b-SM-5GU67 52.2
GTEX-12WSA-0011-R5b-SM-5GU5I 50.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 49.8
GTEX-XMD1-0011-R5A-SM-4AT47 48.7
GTEX-WWYW-0011-R5A-SM-3NB3E 47.7
GTEX-13X6I-0011-R5a-SM-5PNWW 47.5
GTEX-13JUV-0011-R5a-SM-5LZY5 47.2
GTEX-OHPN-0011-R5A-SM-2I5FF 46.0
GTEX-NL4W-0011-R5a-SM-2I3GD 44.6
GTEX-P44H-0011-R5A-SM-2XCEX 44.3
GTEX-13NYS-0011-R5a-SM-5MR4D 43.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 42.9
GTEX-QMR6-0011-R5A-SM-32PKT 41.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 41.3
GTEX-11H98-0011-R5b-SM-57WCF 40.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 40.6
GTEX-N7MT-0011-R5a-SM-2I3G6 40.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 39.8
GTEX-12WSF-0011-R5a-SM-5HL8K 39.5
GTEX-PVOW-0011-R5A-SM-32PL7 39.1
GTEX-13JVG-0011-R5a-SM-5MR4O 39.0
GTEX-X4XX-0011-R5A-SM-46MWN 39.0
GTEX-13X6K-0011-R5b-SM-5PNUE 38.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 37.4
GTEX-144GO-0011-R5a-SM-5PNUR 37.2
GTEX-T2IS-0011-R5A-SM-32QP4 37.0
GTEX-X585-0011-R5A-SM-46MVI 36.9
GTEX-13OW6-0011-R5a-SM-5O9BK 36.7
GTEX-131YS-0011-R5b-SM-5K7YB 36.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 36.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 36.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 36.1
GTEX-1445S-0011-R5a-SM-5PNUS 35.5
GTEX-13RTJ-0011-R5a-SM-5P9HR 35.1
GTEX-RVPV-0011-R5A-SM-2TF69 34.9
GTEX-QVJO-0011-R5A-SM-2S1QM 34.7
GTEX-13OW5-0011-R5b-SM-5L3FR 34.4
GTEX-WVLH-0011-R5A-SM-3MJFW 33.9
GTEX-X261-0011-R5A-SM-3NMB4 33.6
GTEX-RU72-0011-R5A-SM-2TF6U 33.4
GTEX-NPJ7-0011-R5a-SM-33HBK 33.3
GTEX-N7MS-0011-R5a-SM-2HMK8 33.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 33.0
GTEX-RVPU-0011-R5A-SM-2XCAD 32.9
GTEX-13G51-0011-R5a-SM-5L3EB 32.8
GTEX-11GSP-0011-R5a-SM-57WBE 32.3
GTEX-1399T-0011-R5b-SM-5IJDK 32.0
GTEX-13FLV-0011-R5a-SM-5LZWT 31.7
GTEX-13OVH-0011-R5b-SM-5KM4L 31.7
GTEX-UTHO-0011-R5A-SM-3GIJD 31.7
GTEX-14BIM-0011-R5b-SM-5S2RM 31.6
GTEX-13CZV-0011-R5a-SM-5K7XA 31.2
GTEX-WZTO-0011-R5B-SM-3NMC5 31.2
GTEX-ZUA1-0011-R5b-SM-51MTG 31.1
GTEX-T6MN-0011-R5A-SM-32QPD 30.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 30.6
GTEX-145LS-0011-R5a-SM-5SI65 30.2
GTEX-S7SE-0011-R5A-SM-2XCDA 30.1
GTEX-WL46-0011-R5A-SM-3LK6V 30.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 30.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 29.8
GTEX-NL3H-0011-R5a-SM-2I3GB 29.6
GTEX-R55E-0011-R5A-SM-2TC5N 29.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 29.4
GTEX-YFC4-0011-R5a-SM-4RGLR 29.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 29.3
GTEX-11WQC-0011-R5a-SM-5BC74 29.1
GTEX-ZE7O-0011-R5a-SM-57WBO 29.0
GTEX-ZXG5-0011-R5b-SM-57WBN 29.0
GTEX-139TS-0011-R5b-SM-5J2MZ 28.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 28.4
GTEX-13O3O-0011-R5b-SM-5KM44 28.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 28.2
GTEX-11NV4-0011-R5a-SM-5NQ88 27.7
GTEX-13OVL-0011-R5b-SM-5L3FU 27.2
GTEX-14ABY-0011-R5b-SM-5SI7B 27.1
GTEX-14BIN-0011-R5b-SM-5SI78 27.0
GTEX-11OF3-0011-R5a-SM-57WB4 26.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 26.5
GTEX-139TT-0011-R5b-SM-5K7W8 26.4
GTEX-13S7M-0011-R5b-SM-5P9HS 26.4
GTEX-12WSC-0011-R5b-SM-5CVNS 26.1
GTEX-13VXU-0011-R5a-SM-5O9D7 26.1
GTEX-12WSD-0011-R5b-SM-5CVNG 26.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 26.0
GTEX-T5JC-0011-R5A-SM-32PLK 25.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 25.5
GTEX-13FXS-0011-R5b-SM-5LZYE 25.5
GTEX-ZV68-0011-R5a-SM-4YCDW 25.5
GTEX-13NYB-0011-R5a-SM-5MR45 25.3
GTEX-Z93S-0011-R5b-SM-4RGNI 25.2
GTEX-13OW7-0011-R5b-SM-5O9DM 25.1
GTEX-TSE9-0011-R5A-SM-3DB7J 24.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 24.7
GTEX-ZVT3-0011-R5a-SM-51MSI 24.5
GTEX-XOTO-0011-R5A-SM-4B657 24.4
GTEX-1313W-0011-R5b-SM-5L3EP 24.2
GTEX-13CIG-0011-R5b-SM-5L3F2 24.2
GTEX-13X6J-0011-R5b-SM-5PNWT 23.7
GTEX-13112-0011-R5b-SM-5DUV8 23.4
GTEX-13SLX-0011-R5a-SM-5O9BV 23.1
GTEX-OXRN-0011-R5A-SM-2I5EF 22.9
GTEX-13FLW-0011-R5a-SM-5LZX6 22.7
GTEX-145MH-0011-R5a-SM-5P9JT 21.6
GTEX-12ZZX-0011-R5a-SM-5HL89 21.3
GTEX-S7PM-0011-R5A-SM-3NM8G 21.3
GTEX-1477Z-0011-R5b-SM-5PNUO 21.1
GTEX-144GL-0011-R5b-SM-5PNUJ 21.0
GTEX-139T8-0011-R5b-SM-5J1MO 20.8
GTEX-11UD1-0011-R5b-SM-5P9FP 19.6
GTEX-12WSH-0011-R5b-SM-5P9F3 18.9
GTEX-13CF2-0011-R5a-SM-5LZWS 18.1
GTEX-13FHP-0011-R5b-SM-5LZY2 17.1
GTEX-YJ89-0011-R5a-SM-4V6GM 16.1
GTEX-13NZA-0011-R5b-SM-5KM4K 14.0
GTEX-145MG-0011-R5b-SM-5S2VU 12.6
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

136.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 136.2
FF:10164-103B2 76 years, female 151.0
FF:10379-105H1 89 years, female 121.4

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.