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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:30.7TPM
GTEx:14.4RPKM
FANTOM5:40.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Medium
 

Antibody staining

Antibody HPA036539

  

Endothelial cells

 Low  

Glandular cells

 High  

Peripheral nerve/ganglion

 Medium  
 
 

COLON - HPA RNA-seq

Average TPM

30.7
overview Male, age 54
Sample 1
TPM: 27.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 26.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 27.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 24.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 23.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 39.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 36.5
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 33.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 32.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 33.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 32.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 34.6
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 26.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

14.4

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 14.9
Samples: 149

Max RPKM: 21.4
Min RPKM: 9.6
Std RPKM: 2
Median RPKM: 14.8
GTEX-11TT1-0926-SM-5GU5M 21.4
GTEX-12WSL-1826-SM-5LZW9 20.3
GTEX-146FH-2426-SM-5Q5EW 20.0
GTEX-131XG-1526-SM-5GCNQ 19.8
GTEX-ZLFU-1426-SM-4WWEU 19.2
GTEX-13OW6-2226-SM-5N9FL 19.1
GTEX-1399U-2226-SM-5KLZI 18.8
GTEX-11WQK-2526-SM-5CVL8 18.6
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 14.0
Samples: 196

Max RPKM: 21.7
Min RPKM: 8.7
Std RPKM: 2.2
Median RPKM: 13.8
GTEX-11TT1-1026-SM-5PNW7 21.7
GTEX-11WQK-2126-SM-5EQME 19.8
GTEX-146FQ-1926-SM-5NQBY 19.7
GTEX-X5EB-0926-SM-46MVT 19.1
GTEX-1339X-1626-SM-5IJDN 19.0
GTEX-ZV6S-1226-SM-59HLH 18.7
GTEX-13U4I-2426-SM-5LU34 18.5
GTEX-PWOO-1326-SM-48TCJ 18.5
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

40.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 40.8
FF:10014-101C5 62,83,84 years, mixed 40.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.