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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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SCG2
  • TISSUE

  • CELL

  • CANCER

CANCER ATLAS

GENE/PROTEIN

Antibody validation

Dictionary

Level of antibody staining/expression





High
Medium
Low
Not detected

CANCER ATLAS

Gene description

Secretogranin II

Protein class

Plasma proteins, Predicted secreted proteins

Protein evidence

Evidence at protein level
Colorectal cancer
Breast cancer
Prostate cancer
Lung cancer
Carcinoid

STAINING SUMMARY

HPA011893
CAB002519

Tissue

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Tissue

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Malignant tissues showed mostly moderate cytoplasmic immunoreactivity. Nuclear positivity was also seen as distinctly stained nucleoli in some tissues. Malignant carcinoids and a few ovarian cancers were strongly positive. Colorectal, endometrial cancers and malignant lymphomas were mostly weakly stained. Cholangiocarcinomas were moderately stained whereas normal bile ducts were negative.

Tissue

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Tissue

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Malignant cells showed weak to moderate cytoplasmic immunoreactivity. Nuclear positivity was observed in several cases.

GENE INFORMATION

Gene name

SCG2 (HGNC Symbol)

Synonyms

CHGC, SgII, SN

Description

Secretogranin II (HGNC Symbol)

Entrez gene summary

The protein encoded by this gene is a member of the chromogranin/secretogranin family of neuroendocrine secretory proteins. Studies in rodents suggest that the full-length protein, secretogranin II, is involved in the packaging or sorting of peptide hormones and neuropeptides into secretory vesicles. The full-length protein is cleaved to produce the active peptide secretoneurin, which exerts chemotaxic effects on specific cell types, and EM66, whose function is unknown. [provided by RefSeq, Jul 2008]

Chromosome

2

Cytoband

q36.1

Chromosome location (bp)

223596940 - 223602503

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000171951 (version 83.38)

Entrez gene

7857

UniProt

P13521 (UniProt - Evidence at protein level)

neXtProt

NX_P13521

Antibodypedia

SCG2 antibodies

PROTEIN BROWSER

SCG2-001
SCG2-002
SCG2-003

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

SCG2-001
ENSP00000304133
ENST00000305409
P13521 [Direct mapping]
Secretogranin-2 Secretoneurin Manserin
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000165 [MAPK cascade]
GO:0001525 [angiogenesis]
GO:0001937 [negative regulation of endothelial cell proliferation]
GO:0001938 [positive regulation of endothelial cell proliferation]
GO:0005125 [cytokine activity]
GO:0005515 [protein binding]
GO:0005615 [extracellular space]
GO:0006954 [inflammatory response]
GO:0009306 [protein secretion]
GO:0030141 [secretory granule]
GO:0035556 [intracellular signal transduction]
GO:0042056 [chemoattractant activity]
GO:0043542 [endothelial cell migration]
GO:0048245 [eosinophil chemotaxis]
GO:0050918 [positive chemotaxis]
GO:0050930 [induction of positive chemotaxis]
GO:2000352 [negative regulation of endothelial cell apoptotic process]
GO:2001237 [negative regulation of extrinsic apoptotic signaling pathway]
Show all
617 aa
70.9 kDa
Yes 0
SCG2-002
ENSP00000415468
ENST00000433889
C9JDT0 [Direct mapping]
Secretogranin-2
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030141 [secretory granule]
Show all
125 aa
14.4 kDa
Yes 0
SCG2-003
ENSP00000394702
ENST00000421386
C9JQI2 [Direct mapping]
Secretogranin-2
Show all
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
Predicted secreted proteins
   Secreted proteins predicted by MDSEC
   SignalP predicted secreted proteins
   Phobius predicted secreted proteins
   SPOCTOPUS predicted secreted proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0030141 [secretory granule]
Show all
144 aa
16.5 kDa
Yes 0

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