Tissue expression of LINC00116 - Summary

GENERAL INFORMATION
Gene name	LINC00116
Gene description	Long intergenic non-protein coding RNA 116
Protein class	Predicted intracellular proteins Predicted membrane proteins
Predicted localization	Intracellular,Membrane
Number of transcripts	3
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Expressed in all
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

DATA RELIABILITY
Reliability score	Pending normal tissue annotation.

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

N/A

Cerebral cortex

N/A

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

N/A

Thyroid gland

N/A

Parathyroid gland

N/A

Adrenal gland

N/A

Bone marrow & immune system

N/A

Appendix

N/A

Bone marrow

N/A

Lymph node

N/A

Tonsil

N/A

Spleen

N/A

Muscle tissues

N/A

Heart muscle

N/A

Skeletal muscle

N/A

Smooth muscle

N/A

Lung

N/A

Nasopharynx

N/A

Bronchus

N/A

Lung

N/A

Liver & gallbladder

N/A

Liver

N/A

Gallbladder

N/A

Pancreas

N/A

Pancreas

N/A

Gastrointestinal tract

N/A

Oral mucosa

N/A

Salivary gland

N/A

Esophagus

N/A

Stomach

N/A

Duodenum

N/A

Small intestine

N/A

Colon

N/A

Rectum

N/A

Kidney & urinary bladder

N/A

Kidney

N/A

Urinary bladder

N/A

Male tissues

N/A

Testis

N/A

Epididymis

N/A

Prostate

N/A

Seminal vesicle

N/A

Female tissues

N/A

Breast

N/A

Vagina

N/A

Cervix, uterine

N/A

Endometrium

N/A

Fallopian tube

N/A

Ovary

N/A

Placenta

N/A

Adipose & soft tissue

N/A

Adipose tissue

N/A

Soft tissue

N/A

Skin

N/A

Skin

N/A

PROTEIN EXPRESSION OVERVIEW
Pending normal tissue annotation.

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	LINC00116 (HGNC Symbol)
Synonyms	NCRNA00116
Description	Long intergenic non-protein coding RNA 116 (HGNC Symbol)
Entrez gene summary
Chromosome	2
Cytoband	q13
Chromosome location (bp)	110211529 - 110245420
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000175701 (version 83.38)
Entrez gene
UniProt	Q8NCU8 (UniProt - Evidence at protein level)
neXtProt	NX_Q8NCU8
Antibodypedia	LINC00116 antibodies

PROTEIN BROWSER

LINC00116-001	LINC00116-002	LINC00116-003

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
LINC00116-001 ENSP00000485216 ENST00000414416	Q8NCU8 [Direct mapping] Uncharacterized protein encoded by LINC00116 A0A024QYV9 [Target identity:100%; Query identity:100%] HCG1821199, isoform CRA_a Show all	Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins Predicted intracellular proteins Show all	GO:0005887 [integral component of plasma membrane] GO:0016021 [integral component of membrane] Show all	138 aa 15.6 kDa	No	0
LINC00116-002 ENSP00000485373 ENST00000426713	Q8NCU8 [Direct mapping] Uncharacterized protein encoded by LINC00116 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005887 [integral component of plasma membrane] GO:0016021 [integral component of membrane] Show all	56 aa 6.5 kDa	No	1
LINC00116-003 ENSP00000485064 ENST00000611969	Q8NCU8 [Direct mapping] Uncharacterized protein encoded by LINC00116 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005887 [integral component of plasma membrane] GO:0016021 [integral component of membrane] Show all	56 aa 6.5 kDa	No	1