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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:54.9RPKM
FANTOM5:105.1Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Low
Neuronal cells:Medium
 

Antibody staining

Antibody HPA021282

 

Antibody CAB025541

 

Glial cells

Low   Medium  

Neuronal cells

Medium   Medium  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

54.9

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 54.9
Samples: 117

Max RPKM: 112.3
Min RPKM: 19.8
Std RPKM: 15
Median RPKM: 54.8
GTEX-X585-0011-R5A-SM-46MVI 112.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 86.7
GTEX-14BIM-0011-R5b-SM-5S2RM 85.1
GTEX-13X6K-0011-R5b-SM-5PNUE 84.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 82.6
GTEX-1399T-0011-R5b-SM-5IJDK 80.9
GTEX-XMD1-0011-R5A-SM-4AT47 78.8
GTEX-13NYB-0011-R5a-SM-5MR45 78.5
GTEX-132Q8-0011-R5a-SM-5IJDM 78.3
GTEX-13G51-0011-R5a-SM-5L3EB 75.4
GTEX-11GSP-0011-R5a-SM-57WBE 75.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 74.8
GTEX-12WSF-0011-R5a-SM-5HL8K 73.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 72.4
GTEX-13FLW-0011-R5a-SM-5LZX6 71.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70.4
GTEX-13FLV-0011-R5a-SM-5LZWT 70.3
GTEX-13FXS-0011-R5b-SM-5LZYE 69.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 68.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 68.1
GTEX-T6MN-0011-R5A-SM-32QPD 67.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 67.0
GTEX-13OW6-0011-R5a-SM-5O9BK 66.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 66.8
GTEX-ZUA1-0011-R5b-SM-51MTG 66.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 65.6
GTEX-11NV4-0011-R5a-SM-5NQ88 65.2
GTEX-12WSC-0011-R5b-SM-5CVNS 64.5
GTEX-13VXU-0011-R5a-SM-5O9D7 63.5
GTEX-TSE9-0011-R5A-SM-3DB7J 63.3
GTEX-13X6I-0011-R5a-SM-5PNWW 62.7
GTEX-XOTO-0011-R5A-SM-4B657 61.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 61.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 61.2
GTEX-13JUV-0011-R5a-SM-5LZY5 61.2
GTEX-13SLX-0011-R5a-SM-5O9BV 60.9
GTEX-13O3O-0011-R5b-SM-5KM44 60.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60.0
GTEX-145LS-0011-R5a-SM-5SI65 60.0
GTEX-13NYS-0011-R5a-SM-5MR4D 59.9
GTEX-12WSA-0011-R5b-SM-5GU5I 59.7
GTEX-13OW5-0011-R5b-SM-5L3FR 59.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 59.6
GTEX-145MH-0011-R5a-SM-5P9JT 59.5
GTEX-RVPV-0011-R5A-SM-2TF69 59.4
GTEX-OHPN-0011-R5A-SM-2I5FF 59.2
GTEX-13CZV-0011-R5a-SM-5K7XA 59.0
GTEX-WVLH-0011-R5A-SM-3MJFW 58.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 58.8
GTEX-WWYW-0011-R5A-SM-3NB3E 57.8
GTEX-ZE7O-0011-R5a-SM-57WBO 57.5
GTEX-WL46-0011-R5A-SM-3LK6V 56.9
GTEX-13JVG-0011-R5a-SM-5MR4O 56.8
GTEX-N7MT-0011-R5a-SM-2I3G6 56.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 56.4
GTEX-14ABY-0011-R5b-SM-5SI7B 56.2
GTEX-11H98-0011-R5b-SM-57WCF 55.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 54.9
GTEX-131YS-0011-R5b-SM-5K7YB 54.8
GTEX-13OVL-0011-R5b-SM-5L3FU 54.8
GTEX-RVPU-0011-R5A-SM-2XCAD 54.7
GTEX-1313W-0011-R5b-SM-5L3EP 54.3
GTEX-13OW7-0011-R5b-SM-5O9DM 54.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 54.0
GTEX-X4XX-0011-R5A-SM-46MWN 54.0
GTEX-Z93S-0011-R5b-SM-4RGNI 54.0
GTEX-ZXG5-0011-R5b-SM-57WBN 52.7
GTEX-11OF3-0011-R5a-SM-57WB4 52.4
GTEX-N7MS-0011-R5a-SM-2HMK8 52.4
GTEX-RU72-0011-R5A-SM-2TF6U 52.3
GTEX-WZTO-0011-R5B-SM-3NMC5 52.1
GTEX-12WSB-0011-R5b-SM-5GU67 50.7
GTEX-12WSD-0011-R5b-SM-5CVNG 50.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 49.9
GTEX-13X6J-0011-R5b-SM-5PNWT 49.4
GTEX-T5JC-0011-R5A-SM-32PLK 48.9
GTEX-139T8-0011-R5b-SM-5J1MO 48.8
GTEX-139TT-0011-R5b-SM-5K7W8 48.2
GTEX-144GO-0011-R5a-SM-5PNUR 48.2
GTEX-13PLJ-0011-R5a-SM-5O9BG 48.0
GTEX-14BIN-0011-R5b-SM-5SI78 47.9
GTEX-13CIG-0011-R5b-SM-5L3F2 47.7
GTEX-UTHO-0011-R5A-SM-3GIJD 47.7
GTEX-YFC4-0011-R5a-SM-4RGLR 47.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 47.6
GTEX-QVJO-0011-R5A-SM-2S1QM 47.2
GTEX-X261-0011-R5A-SM-3NMB4 46.9
GTEX-139TS-0011-R5b-SM-5J2MZ 46.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 45.7
GTEX-QMR6-0011-R5A-SM-32PKT 45.0
GTEX-144GL-0011-R5b-SM-5PNUJ 44.0
GTEX-YJ89-0011-R5a-SM-4V6GM 43.7
GTEX-R55E-0011-R5A-SM-2TC5N 43.6
GTEX-12ZZX-0011-R5a-SM-5HL89 42.7
GTEX-11WQC-0011-R5a-SM-5BC74 42.4
GTEX-NL3H-0011-R5a-SM-2I3GB 41.7
GTEX-ZV68-0011-R5a-SM-4YCDW 41.1
GTEX-S7SE-0011-R5A-SM-2XCDA 40.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 39.2
GTEX-NL4W-0011-R5a-SM-2I3GD 39.1
GTEX-ZVT3-0011-R5a-SM-51MSI 37.7
GTEX-13FHP-0011-R5b-SM-5LZY2 36.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 36.8
GTEX-P44H-0011-R5A-SM-2XCEX 36.7
GTEX-13112-0011-R5b-SM-5DUV8 35.8
GTEX-1445S-0011-R5a-SM-5PNUS 34.3
GTEX-NPJ7-0011-R5a-SM-33HBK 33.4
GTEX-1477Z-0011-R5b-SM-5PNUO 33.2
GTEX-11UD1-0011-R5b-SM-5P9FP 32.0
GTEX-PVOW-0011-R5A-SM-32PL7 32.0
GTEX-12WSH-0011-R5b-SM-5P9F3 31.4
GTEX-13CF2-0011-R5a-SM-5LZWS 31.0
GTEX-OXRN-0011-R5A-SM-2I5EF 28.7
GTEX-145MG-0011-R5b-SM-5S2VU 27.7
GTEX-S7PM-0011-R5A-SM-3NM8G 27.1
GTEX-13NZA-0011-R5b-SM-5KM4K 21.6
GTEX-T2IS-0011-R5A-SM-32QP4 19.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

105.1

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 105.1
FF:10164-103B2 76 years, female 116.2
FF:10379-105H1 89 years, female 93.9

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