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CLRN3

GENERAL INFORMATION

Gene name

 CLRN3

Gene description

 Clarin 3

Protein class

 Predicted membrane proteins
Transporters

Predicted localization

 Membrane

Number of transcripts

 1
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Group enriched (small intestine, rectum, duodenum, colon, kidney, liver, gallbladder)
GTEx:Group enriched (small intestine, colon, liver, kidney)
FANTOM5:Tissue enhanced (small intestine, colon)

Protein evidence

 Evidence at protein level

Protein expression

 Cytoplasmic expression in the intestinal tract, kidney, liver and gallbladder.

DATA RELIABILITY

Data reliability
description

 Pending external verification. Presumed off target binding observed and disregarded.

Reliability score

 Approved based on 1 antibody.
HPA014482
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RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
Caudate
N/A
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Bronchus
N/A
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Vagina
N/A
Adipose & soft tissue
Skin
Cerebral cortex

Lymph node

Liver

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW
Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Group enriched (small intestine, rectum, duodenum, colon, kidney, liver, gallbladder)
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Group enriched (small intestine, colon, liver, kidney)
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Tissue enhanced (small intestine, colon)

GENE INFORMATION

Gene name

 CLRN3 (HGNC Symbol)

Synonyms

 MGC32871, TMEM12, USH3AL1

Description

 Clarin 3 (HGNC Symbol)

Entrez gene summary

Chromosome

 10

Cytoband

 q26.2

Chromosome location (bp)

 127877841 - 127892947

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000180745 (version 83.38)

Entrez gene

 119467

UniProt

 Q8NCR9 (UniProt - Evidence at transcript level)

neXtProt

 NX_Q8NCR9

Antibodypedia

 CLRN3 antibodies

PROTEIN BROWSER
CLRN3-001

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
CLRN3-001
ENSP00000357660
ENST00000368671
Q8NCR9 [Direct mapping]
Clarin-3
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Transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
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GO:0016021 [integral component of membrane]
GO:0070062 [extracellular exosome]
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 226 aa
25.3 kDa 		No 3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.