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TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:36.4RPKM
FANTOM5:55.4Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Low
 

Antibody staining

Antibody HPA018884

 

Antibody CAB012463

 

Glial cells

Not detected   Not detected  

Neuronal cells

Low   Low  
   
   
   

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

36.4

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 36.4
Samples: 117

Max RPKM: 68.9
Min RPKM: 18.8
Std RPKM: 8.7
Median RPKM: 35
GTEX-13JUV-0011-R5a-SM-5LZY5 68.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 58.6
GTEX-WWYW-0011-R5A-SM-3NB3E 57.8
GTEX-132Q8-0011-R5a-SM-5IJDM 55.8
GTEX-X585-0011-R5A-SM-46MVI 55.7
GTEX-NL4W-0011-R5a-SM-2I3GD 55.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 52.0
GTEX-X261-0011-R5A-SM-3NMB4 50.2
GTEX-OHPN-0011-R5A-SM-2I5FF 48.1
GTEX-12WSF-0011-R5a-SM-5HL8K 47.2
GTEX-N7MT-0011-R5a-SM-2I3G6 47.2
GTEX-13X6K-0011-R5b-SM-5PNUE 45.8
GTEX-12WSB-0011-R5b-SM-5GU67 44.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 44.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 43.8
GTEX-13X6I-0011-R5a-SM-5PNWW 43.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 43.6
GTEX-XMD1-0011-R5A-SM-4AT47 43.6
GTEX-13JVG-0011-R5a-SM-5MR4O 43.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 43.2
GTEX-11H98-0011-R5b-SM-57WCF 42.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 42.4
GTEX-13FLV-0011-R5a-SM-5LZWT 42.1
GTEX-13OW5-0011-R5b-SM-5L3FR 42.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 42.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 41.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 41.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 41.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 41.1
GTEX-12WSA-0011-R5b-SM-5GU5I 41.0
GTEX-11GSP-0011-R5a-SM-57WBE 40.9
GTEX-13NYB-0011-R5a-SM-5MR45 40.9
GTEX-TSE9-0011-R5A-SM-3DB7J 40.8
GTEX-RVPV-0011-R5A-SM-2TF69 40.4
GTEX-X4XX-0011-R5A-SM-46MWN 40.1
GTEX-ZUA1-0011-R5b-SM-51MTG 40.1
GTEX-RU72-0011-R5A-SM-2TF6U 39.4
GTEX-144GO-0011-R5a-SM-5PNUR 38.8
GTEX-13OW6-0011-R5a-SM-5O9BK 38.7
GTEX-14BIM-0011-R5b-SM-5S2RM 38.7
GTEX-13G51-0011-R5a-SM-5L3EB 38.4
GTEX-139T8-0011-R5b-SM-5J1MO 38.1
GTEX-1399T-0011-R5b-SM-5IJDK 37.6
GTEX-WZTO-0011-R5B-SM-3NMC5 37.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 37.3
GTEX-131YS-0011-R5b-SM-5K7YB 36.9
GTEX-13FXS-0011-R5b-SM-5LZYE 36.8
GTEX-P44H-0011-R5A-SM-2XCEX 36.8
GTEX-R55E-0011-R5A-SM-2TC5N 36.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 36.6
GTEX-13OVH-0011-R5b-SM-5KM4L 36.4
GTEX-T5JC-0011-R5A-SM-32PLK 36.4
GTEX-145LS-0011-R5a-SM-5SI65 36.3
GTEX-T6MN-0011-R5A-SM-32QPD 36.3
GTEX-12ZZY-0011-R5a-SM-5EGL9 36.2
GTEX-N7MS-0011-R5a-SM-2HMK8 36.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 35.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 35.0
GTEX-1445S-0011-R5a-SM-5PNUS 34.9
GTEX-12WSC-0011-R5b-SM-5CVNS 34.8
GTEX-S7SE-0011-R5A-SM-2XCDA 34.8
GTEX-NL3H-0011-R5a-SM-2I3GB 34.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 34.6
GTEX-WL46-0011-R5A-SM-3LK6V 34.4
GTEX-WVLH-0011-R5A-SM-3MJFW 34.3
GTEX-ZV68-0011-R5a-SM-4YCDW 34.2
GTEX-13O3O-0011-R5b-SM-5KM44 34.0
GTEX-13SLX-0011-R5a-SM-5O9BV 33.7
GTEX-13CIG-0011-R5b-SM-5L3F2 33.5
GTEX-QVJO-0011-R5A-SM-2S1QM 33.4
GTEX-13OW7-0011-R5b-SM-5O9DM 33.1
GTEX-13OVL-0011-R5b-SM-5L3FU 32.7
GTEX-QMR6-0011-R5A-SM-32PKT 32.7
GTEX-ZE7O-0011-R5a-SM-57WBO 32.7
GTEX-YFC4-0011-R5a-SM-4RGLR 32.6
GTEX-RVPU-0011-R5A-SM-2XCAD 32.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 32.4
GTEX-13S7M-0011-R5b-SM-5P9HS 32.3
GTEX-13VXU-0011-R5a-SM-5O9D7 32.2
GTEX-13FLW-0011-R5a-SM-5LZX6 32.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 32.0
GTEX-13CZV-0011-R5a-SM-5K7XA 31.8
GTEX-12ZZX-0011-R5a-SM-5HL89 31.7
GTEX-13X6J-0011-R5b-SM-5PNWT 31.7
GTEX-XOTO-0011-R5A-SM-4B657 31.7
GTEX-14ABY-0011-R5b-SM-5SI7B 31.6
GTEX-11NV4-0011-R5a-SM-5NQ88 31.3
GTEX-1313W-0011-R5b-SM-5L3EP 31.2
GTEX-145MH-0011-R5a-SM-5P9JT 31.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 30.6
GTEX-139TT-0011-R5b-SM-5K7W8 29.4
GTEX-14BIN-0011-R5b-SM-5SI78 29.2
GTEX-ZXG5-0011-R5b-SM-57WBN 29.1
GTEX-NPJ7-0011-R5a-SM-33HBK 28.9
GTEX-11WQC-0011-R5a-SM-5BC74 28.6
GTEX-UTHO-0011-R5A-SM-3GIJD 28.3
GTEX-12WSD-0011-R5b-SM-5CVNG 27.6
GTEX-11OF3-0011-R5a-SM-57WB4 27.3
GTEX-144GL-0011-R5b-SM-5PNUJ 27.3
GTEX-1477Z-0011-R5b-SM-5PNUO 27.3
GTEX-Z93S-0011-R5b-SM-4RGNI 27.2
GTEX-ZVT3-0011-R5a-SM-51MSI 27.1
GTEX-139TS-0011-R5b-SM-5J2MZ 26.7
GTEX-PVOW-0011-R5A-SM-32PL7 26.5
GTEX-13112-0011-R5b-SM-5DUV8 26.3
GTEX-13FHP-0011-R5b-SM-5LZY2 25.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 25.5
GTEX-12WSH-0011-R5b-SM-5P9F3 25.3
GTEX-YJ89-0011-R5a-SM-4V6GM 25.3
GTEX-11UD1-0011-R5b-SM-5P9FP 24.8
GTEX-T2IS-0011-R5A-SM-32QP4 24.1
GTEX-13CF2-0011-R5a-SM-5LZWS 23.2
GTEX-OXRN-0011-R5A-SM-2I5EF 23.2
GTEX-S7PM-0011-R5A-SM-3NM8G 21.5
GTEX-145MG-0011-R5b-SM-5S2VU 19.0
GTEX-13NZA-0011-R5b-SM-5KM4K 18.8
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

55.4

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 55.4
FF:10164-103B2 76 years, female 73.4
FF:10379-105H1 89 years, female 37.4

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