Expression of NPIPB4 in cancer - Summary

CANCER ATLAS

Gene description

Nuclear pore complex interacting protein family, member B4

Protein class

Predicted intracellular proteins, Predicted membrane proteins

Protein evidence

Evidence at protein level

Colorectal cancer

Breast cancer

Prostate cancer

Lung cancer

Urothelial cancer

STAINING SUMMARY

HPA053611

GENE INFORMATION
Gene name	NPIPB4
Synonyms
Description	Nuclear pore complex interacting protein family, member B4 (HGNC Symbol)
Entrez gene summary
Chromosome	16
Cytoband	p12.2
Chromosome location (bp)	21834569 - 21880827
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000185864 (version 83.38)
Entrez gene	440345
UniProt	C9JG80 (UniProt - Inferred from homology)
neXtProt	NX_C9JG80
Antibodypedia	NPIPB4 antibodies

PROTEIN BROWSER

NPIPB4-001	NPIPB4-004	NPIPB4-007	NPIPB4-016	NPIPB4-017	NPIPB4-201	NPIPB4-202	NPIPB4-203

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
NPIPB4-001 ENSP00000429543 ENST00000518761	E7EQW1 [Direct mapping] Nuclear pore complex-interacting protein family member B4 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	148 aa 17.3 kDa	No	1
NPIPB4-004 ENSP00000339196 ENST00000341400	C9JB18 [Direct mapping] Nuclear pore complex-interacting protein family member B4 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	163 aa 19.1 kDa	No	1
NPIPB4-007 ENSP00000439732 ENST00000543654	F5H108 [Direct mapping] Nuclear pore complex-interacting protein family member B4 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	90 aa 10.5 kDa	No	1
NPIPB4-016 ENSP00000443445 ENST00000544693	F5H5F2 [Direct mapping] Nuclear pore complex-interacting protein family member B4 Show all	SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Show all		27 aa 3.1 kDa	No	0
NPIPB4-017 ENSP00000442065 ENST00000541674	F5H8A1 [Direct mapping] Nuclear pore complex-interacting protein family member B4 Show all	SPOCTOPUS predicted secreted proteins Predicted intracellular proteins Show all		29 aa 3.3 kDa	No	0
NPIPB4-201 ENSP00000404439 ENST00000415645	C9JG80 [Direct mapping] Nuclear pore complex-interacting protein family member B4 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	1138 aa 126.7 kDa	No	1
NPIPB4-202 ENSP00000439166 ENST00000537951	F5H3D4 [Direct mapping] Nuclear pore complex-interacting protein family member B4 Show all	Predicted intracellular proteins Show all		420 aa 45.8 kDa	No	0
NPIPB4-203 ENSP00000477616 ENST00000614197	A0A087WT63 [Direct mapping] Nuclear pore complex-interacting protein family member B4 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 2TM proteins predicted by MDM Show all	GO:0016021 [integral component of membrane] Show all	250 aa 29.3 kDa	Yes	2