We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
H1F0
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:40.9RPKM
FANTOM5:104.0Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:High
Neuronal cells:High
 

Antibody staining

Antibody HPA000843

 

Glial cells

High  

Neuronal cells

High  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

40.9

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 40.9
Samples: 117

Max RPKM: 90.8
Min RPKM: 13.1
Std RPKM: 12.3
Median RPKM: 39.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 90.8
GTEX-OHPN-0011-R5A-SM-2I5FF 78.3
GTEX-12WSA-0011-R5b-SM-5GU5I 73.7
GTEX-13JVG-0011-R5a-SM-5MR4O 71.5
GTEX-132Q8-0011-R5a-SM-5IJDM 71.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 70.7
GTEX-144GO-0011-R5a-SM-5PNUR 62.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60.8
GTEX-139TT-0011-R5b-SM-5K7W8 58.3
GTEX-T5JC-0011-R5A-SM-32PLK 57.8
GTEX-XMD1-0011-R5A-SM-4AT47 57.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 56.8
GTEX-13G51-0011-R5a-SM-5L3EB 54.2
GTEX-13JUV-0011-R5a-SM-5LZY5 54.2
GTEX-QVJO-0011-R5A-SM-2S1QM 53.7
GTEX-13OW6-0011-R5a-SM-5O9BK 52.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 51.0
GTEX-WZTO-0011-R5B-SM-3NMC5 49.8
GTEX-14ABY-0011-R5b-SM-5SI7B 49.3
GTEX-S7SE-0011-R5A-SM-2XCDA 49.0
GTEX-X585-0011-R5A-SM-46MVI 48.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 47.9
GTEX-T6MN-0011-R5A-SM-32QPD 47.6
GTEX-N7MS-0011-R5a-SM-2HMK8 46.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 46.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 45.8
GTEX-12WSC-0011-R5b-SM-5CVNS 45.7
GTEX-131YS-0011-R5b-SM-5K7YB 45.5
GTEX-13NYB-0011-R5a-SM-5MR45 45.5
GTEX-N7MT-0011-R5a-SM-2I3G6 45.5
GTEX-11GSP-0011-R5a-SM-57WBE 45.1
GTEX-145LS-0011-R5a-SM-5SI65 45.1
GTEX-RVPV-0011-R5A-SM-2TF69 45.0
GTEX-R55E-0011-R5A-SM-2TC5N 44.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 44.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 44.4
GTEX-WVLH-0011-R5A-SM-3MJFW 44.4
GTEX-13OW7-0011-R5b-SM-5O9DM 44.3
GTEX-13O3O-0011-R5b-SM-5KM44 44.2
GTEX-Z93S-0011-R5b-SM-4RGNI 44.2
GTEX-13FLV-0011-R5a-SM-5LZWT 44.1
GTEX-13X6J-0011-R5b-SM-5PNWT 44.1
GTEX-11OF3-0011-R5a-SM-57WB4 44.0
GTEX-11H98-0011-R5b-SM-57WCF 43.8
GTEX-12ZZX-0011-R5a-SM-5HL89 43.7
GTEX-1399T-0011-R5b-SM-5IJDK 43.3
GTEX-13CZV-0011-R5a-SM-5K7XA 43.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 43.1
GTEX-11NV4-0011-R5a-SM-5NQ88 42.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 41.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 41.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 41.0
GTEX-1313W-0011-R5b-SM-5L3EP 40.9
GTEX-145MH-0011-R5a-SM-5P9JT 40.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 39.5
GTEX-13VXU-0011-R5a-SM-5O9D7 39.5
GTEX-Y8DK-0011-R5B-SM-4RTW6 39.5
GTEX-X4XX-0011-R5A-SM-46MWN 39.4
GTEX-13NYS-0011-R5a-SM-5MR4D 39.2
GTEX-RVPU-0011-R5A-SM-2XCAD 39.2
GTEX-WHSE-0011-R5A-SM-3P5ZO 39.2
GTEX-WL46-0011-R5A-SM-3LK6V 39.1
GTEX-13OVL-0011-R5b-SM-5L3FU 38.8
GTEX-TSE9-0011-R5A-SM-3DB7J 38.7
GTEX-UTHO-0011-R5A-SM-3GIJD 38.7
GTEX-12WSB-0011-R5b-SM-5GU67 38.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 38.2
GTEX-RU72-0011-R5A-SM-2TF6U 37.9
GTEX-12WSD-0011-R5b-SM-5CVNG 37.8
GTEX-X261-0011-R5A-SM-3NMB4 37.1
GTEX-XOTO-0011-R5A-SM-4B657 37.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 37.0
GTEX-P44H-0011-R5A-SM-2XCEX 36.3
GTEX-YJ89-0011-R5a-SM-4V6GM 35.9
GTEX-13FXS-0011-R5b-SM-5LZYE 35.8
GTEX-ZXG5-0011-R5b-SM-57WBN 35.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 35.6
GTEX-14BIM-0011-R5b-SM-5S2RM 35.1
GTEX-14BIN-0011-R5b-SM-5SI78 35.1
GTEX-ZE7O-0011-R5a-SM-57WBO 34.7
GTEX-13S7M-0011-R5b-SM-5P9HS 34.6
GTEX-139TS-0011-R5b-SM-5J2MZ 34.5
GTEX-13OVH-0011-R5b-SM-5KM4L 34.3
GTEX-13OW5-0011-R5b-SM-5L3FR 34.0
GTEX-13X6K-0011-R5b-SM-5PNUE 33.9
GTEX-13FLW-0011-R5a-SM-5LZX6 33.8
GTEX-QMR6-0011-R5A-SM-32PKT 33.6
GTEX-13SLX-0011-R5a-SM-5O9BV 32.6
GTEX-T2IS-0011-R5A-SM-32QP4 32.6
GTEX-S7PM-0011-R5A-SM-3NM8G 31.4
GTEX-13CF2-0011-R5a-SM-5LZWS 31.2
GTEX-NL3H-0011-R5a-SM-2I3GB 30.6
GTEX-1445S-0011-R5a-SM-5PNUS 30.5
GTEX-144GL-0011-R5b-SM-5PNUJ 30.5
GTEX-PVOW-0011-R5A-SM-32PL7 30.3
GTEX-12WSF-0011-R5a-SM-5HL8K 30.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 30.0
GTEX-YFC4-0011-R5a-SM-4RGLR 29.5
GTEX-NL4W-0011-R5a-SM-2I3GD 29.4
GTEX-13112-0011-R5b-SM-5DUV8 28.6
GTEX-NPJ7-0011-R5a-SM-33HBK 28.2
GTEX-OXRN-0011-R5A-SM-2I5EF 28.2
GTEX-11WQC-0011-R5a-SM-5BC74 28.1
GTEX-11UD1-0011-R5b-SM-5P9FP 27.4
GTEX-1477Z-0011-R5b-SM-5PNUO 27.3
GTEX-ZVT3-0011-R5a-SM-51MSI 27.2
GTEX-PWO3-0011-R5A-SM-2I5EZ 26.4
GTEX-WWYW-0011-R5A-SM-3NB3E 26.4
GTEX-13NZA-0011-R5b-SM-5KM4K 26.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 26.0
GTEX-ZV68-0011-R5a-SM-4YCDW 24.7
GTEX-13CIG-0011-R5b-SM-5L3F2 24.0
GTEX-13FHP-0011-R5b-SM-5LZY2 23.3
GTEX-145MG-0011-R5b-SM-5S2VU 20.9
GTEX-12WSH-0011-R5b-SM-5P9F3 17.6
GTEX-139T8-0011-R5b-SM-5J1MO 13.1
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

104.0

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 104.0
FF:10164-103B2 76 years, female 127.1
FF:10379-105H1 89 years, female 80.9

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.