Tissue expression of HMGB1 - Staining in cerebral cortex

CEREBRAL CORTEX - Expression summary

Protein expression

RNA expression

HPA:	425.9	TPM
GTEx:	30.6	RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:	Medium
Glial cells:	High
Neuronal cells:	Low
Neuropil:	Not detected

Antibody staining	Antibody HPA003506	Antibody CAB005873
Endothelial cells	Medium	Medium
Glial cells	High	Medium
Neuronal cells	Low	Not detected
Neuropil	Not detected	Not detected

CEREBRAL CORTEX - HPA RNA-seq

Average TPM	425.9

Male, age 5

Sample 1
TPM: 398.9

Female, age 40

Sample 2
TPM: 568.5

Cell types%

Neuronal cells: 35
Glial cells and endothelial cells: 65

Male, age 70

Sample 3
TPM: 310.2

Cell types%

Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM	30.6

GTEx sample id

RPKM

Brain - Cortex

Brain - Cortex
RPKM: 28.0

Samples: 114

Max RPKM: 45.2
Min RPKM: 19.3
Std RPKM: 4.8
Median RPKM: 26.7

GTEX-QMR6-1426-SM-32PLA

45.2

GTEX-QDT8-2926-SM-32PKC

44.9

GTEX-13G51-3026-SM-5IJB8

44.5

GTEX-UTHO-3026-SM-3GAFB

41.4

GTEX-QVUS-2826-SM-3GADB

38.7

GTEX-13FHO-3026-SM-5J1O9

38.3

GTEX-N7MT-1126-SM-5SI7V

37.2

GTEX-XLM4-3026-SM-4AT6L

35.5

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Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 33.4

Samples: 108

Max RPKM: 59.6
Min RPKM: 20.1
Std RPKM: 7.2
Median RPKM: 32.1

GTEX-ZE7O-0011-R10a-SM-57WAZ

59.6

GTEX-P44H-0011-R10A-SM-2XCEK

59.5

GTEX-QMR6-0011-R10A-SM-32PKO

55.2

GTEX-QVUS-0011-R10A-SM-3GIK3

54.6

GTEX-QDT8-0011-R10A-SM-32PKG

54.0

GTEX-12WSD-0011-R10b-SM-5GU79

52.6

GTEX-13JVG-0011-R10b-SM-5KM2P

48.3

GTEX-X4EP-0011-R10B-SM-4QASJ

44.2

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CEREBRAL CORTEX - FANTOM5 CAGE
No Fantom CAGE analysis found for this gene / tissue