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Field

Term
Gene name

Class

Subclass

Chromosome

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In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

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Searches

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Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

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Score

Score

Score

Antibodies

Column

 
 
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AFAP1
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

CANCER ATLAS

GENE/PROTEIN

Antibody validation

Dictionary

Level of antibody staining/expression





High
Medium
Low
Not detected

CANCER ATLAS

Gene description

Actin filament associated protein 1

Protein class

Predicted intracellular proteins

Protein evidence

Evidence at protein level
Colorectal cancer
Breast cancer
Prostate cancer
Lung cancer

STAINING SUMMARY

HPA015642
CAB024712

Tissue

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Tissue

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Colorectal, prostate, testicular and liver cancers showed moderate to strong cytoplasmic staining. Remaining malignant cells generally displayed weak cytoplasmic staining or negative cells.

Tissue

Cancer staining

Protein
expression of
normal tissue

Breast cancer
 
Carcinoid
 
Cervical cancer
 
 
Colorectal cancer
 
 
Endometrial cancer
 
 
Glioma
 
Head and neck cancer
 
 
Liver cancer
 
 
Lung cancer
 
 
Lymphoma
 
 
 

Tissue

Cancer staining

Protein
expression of
normal tissue

Melanoma
 
Ovarian cancer
 
Pancreatic cancer
 
Prostate cancer
 
Renal cancer
 
Skin cancer
 
Stomach cancer
 
 
Testis cancer
 
Thyroid cancer
 
Urothelial cancer
 

Staining summary

Most of the malignant cells displayed moderate cytoplasmic positivity. Several cases of lymphomas, prostate, renal and ovarian cancers along with a few cases of squamous cell carcinomas and gliomas were either negative or weakly stained.

GENE INFORMATION

Gene name

AFAP1 (HGNC Symbol)

Synonyms

AFAP, AFAP-110

Description

Actin filament associated protein 1 (HGNC Symbol)

Entrez gene summary

The protein encoded by this gene is a Src binding partner. It may represent a potential modulator of actin filament integrity in response to cellular signals, and may function as an adaptor protein by linking Src family members and/or other signaling proteins to actin filaments. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2008]

Chromosome

4

Cytoband

p16.1

Chromosome location (bp)

7758714 - 7939926

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000196526 (version 83.38)

Entrez gene

60312

UniProt

Q8N556 (UniProt - Evidence at protein level)

neXtProt

NX_Q8N556

Antibodypedia

AFAP1 antibodies

PROTEIN BROWSER

AFAP1-001
AFAP1-002
AFAP1-008
AFAP1-201
AFAP1-202

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

AFAP1-001
ENSP00000353402
ENST00000360265
Q8N556 [Direct mapping]
Actin filament-associated protein 1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003779 [actin binding]
GO:0005737 [cytoplasm]
GO:0005925 [focal adhesion]
GO:0009966 [regulation of signal transduction]
GO:0015629 [actin cytoskeleton]
GO:0051493 [regulation of cytoskeleton organization]
Show all
730 aa
80.7 kDa
No 0
AFAP1-002
ENSP00000371983
ENST00000382543
Q8N556 [Direct mapping]
Actin filament-associated protein 1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003779 [actin binding]
GO:0005737 [cytoplasm]
GO:0005925 [focal adhesion]
GO:0009966 [regulation of signal transduction]
GO:0015629 [actin cytoskeleton]
GO:0051493 [regulation of cytoskeleton organization]
Show all
814 aa
89.8 kDa
No 0
AFAP1-008
ENSP00000483962
ENST00000614385
A0A087X177 [Direct mapping]
Actin filament-associated protein 1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0009966 [regulation of signal transduction]
GO:0051493 [regulation of cytoskeleton organization]
Show all
92 aa
9.7 kDa
No 0
AFAP1-201
ENSP00000351245
ENST00000358461
Q8N556 [Direct mapping]
Actin filament-associated protein 1
Show all
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003779 [actin binding]
GO:0005737 [cytoplasm]
GO:0005925 [focal adhesion]
GO:0009966 [regulation of signal transduction]
GO:0015629 [actin cytoskeleton]
GO:0051493 [regulation of cytoskeleton organization]
Show all
730 aa
80.7 kDa
No 0
AFAP1-202
ENSP00000410689
ENST00000420658
Q8N556 [Direct mapping]
Actin filament-associated protein 1
Show all
Predicted intracellular proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003779 [actin binding]
GO:0005737 [cytoplasm]
GO:0005925 [focal adhesion]
GO:0009966 [regulation of signal transduction]
GO:0015629 [actin cytoskeleton]
GO:0051493 [regulation of cytoskeleton organization]
Show all
814 aa
89.8 kDa
No 0

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