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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:38.6TPM
GTEx:18.1RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glial cells:Not detected
Neuronal cells:Not detected
Neuropil:Not detected
 

Antibody staining

Antibody HPA001115

 

Antibody HPA002925

 

Antibody CAB000356

 

Endothelial cells

Medium   Medium   High  

Glial cells

Not detected   Not detected   Not detected  

Neuronal cells

Not detected   Not detected   Not detected  

Neuropil

Not detected   Not detected   Not detected  
     
     
     

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

38.6

N/A Male, age 5
Sample 1
TPM: 30.3
overview Female, age 40
Sample 2
TPM: 34.4
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70
Sample 3
TPM: 51.1
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

18.1

GTEx sample id

RPKM

14.217.423.98.835.9020406080100120140
 
14.217.423.98.835.9020406080100120140

Brain - Cortex

Brain - Cortex
RPKM: 21.9
Samples: 114

Max RPKM: 141.9
Min RPKM: 8.8
Std RPKM: 15.9
Median RPKM: 17.4
GTEX-WZTO-2926-SM-3NM9I 141.9
GTEX-144FL-3026-SM-5O99C 80.9
GTEX-13JVG-3126-SM-5L3FH 65.2
GTEX-X585-3026-SM-46MWF 54.6
GTEX-132Q8-3026-SM-5PNVG 48.5
GTEX-13OVJ-2826-SM-5L3GW 48.4
GTEX-ZZPT-3026-SM-5GZXH 45.3
GTEX-11ONC-2926-SM-5P9JM 45.0
GTEX-139T8-1026-SM-5J2MC 40.0
GTEX-13NYS-3126-SM-5KLYV 38.9
GTEX-1399T-3026-SM-5KLZC 35.9
GTEX-13JUV-2926-SM-5LZX7 35.4
GTEX-12126-1026-SM-5P9JJ 31.6
GTEX-NPJ8-1526-SM-2D7VU 31.1
GTEX-1192X-3126-SM-5N9BY 30.4
GTEX-NPJ7-2726-SM-2I3FT 29.6
GTEX-11GSP-3226-SM-5986O 29.5
GTEX-11EMC-3226-SM-5EGKW 29.0
GTEX-11OC5-0726-SM-5P9JK 28.2
GTEX-13QIC-2926-SM-5J2NF 27.9
GTEX-N7MT-1126-SM-5SI7V 26.8
GTEX-13X6K-2926-SM-5Q5D5 26.4
GTEX-13PVQ-3026-SM-5SI93 25.7
GTEX-11WQK-3026-SM-5EQL6 25.5
GTEX-13VXU-2926-SM-5LU5C 25.1
GTEX-13IVO-2926-SM-5L3CZ 24.9
GTEX-13S7M-3126-SM-5RQJQ 24.6
GTEX-11PRG-2926-SM-5987A 24.4
GTEX-ZAJG-3126-SM-5HL9J 24.0
GTEX-145LS-3126-SM-5Q5BY 23.4
GTEX-12ZZZ-3026-SM-5BC67 23.1
GTEX-11OF3-2926-SM-5HL78 22.9
GTEX-PWO3-0926-SM-2I5EY 22.8
GTEX-13OW8-2826-SM-5L3GC 22.7
GTEX-QVJO-1426-SM-2S1QY 22.5
GTEX-12WSC-3026-SM-5GCNF 22.1
GTEX-12WSD-3126-SM-5HL7P 22.0
GTEX-1117F-3226-SM-5N9CT 21.9
GTEX-QVUS-2826-SM-3GADB 21.5
GTEX-ZVT3-3026-SM-5E43N 21.2
GTEX-11GSO-2926-SM-5HL73 19.8
GTEX-145MF-2726-SM-5O995 19.4
GTEX-11EI6-3026-SM-5GZZO 19.2
GTEX-12WSA-2926-SM-5EQ4D 19.2
GTEX-R55F-1326-SM-5S2V4 19.2
GTEX-12ZZW-2926-SM-5LZUP 19.0
GTEX-13NYC-2826-SM-5K7WR 18.8
GTEX-11DXY-3226-SM-5GIDE 18.6
GTEX-YFC4-3126-SM-5PNV6 18.6
GTEX-XLM4-3026-SM-4AT6L 18.5
GTEX-13FHO-3026-SM-5J1O9 18.1
GTEX-13FXS-3126-SM-5J2NN 17.8
GTEX-Q2AG-2926-SM-2HMJ3 17.7
GTEX-12ZZX-2926-SM-5GCOQ 17.5
GTEX-1445S-3026-SM-5O9BR 17.5
GTEX-11O72-2926-SM-5BC4V 17.4
GTEX-12ZZY-3026-SM-5GCOU 17.4
GTEX-11TTK-2926-SM-5PNYP 17.3
GTEX-14ASI-3026-SM-5S2PN 17.3
GTEX-1128S-2726-SM-5H12C 17.2
GTEX-ZE7O-3126-SM-5HL5X 17.0
GTEX-117XS-3026-SM-5N9CA 16.9
GTEX-Y111-2726-SM-4TT3N 16.7
GTEX-145MG-3026-SM-5RQJA 16.6
GTEX-11DXW-1126-SM-5H12Q 16.3
GTEX-13OW7-3026-SM-5L3GY 16.2
GTEX-RU72-3026-SM-5SI7Y 16.2
GTEX-14A5I-2926-SM-5Q5CQ 15.8
GTEX-WL46-2926-SM-3LK82 15.8
GTEX-ZAK1-3026-SM-5S2MJ 15.7
GTEX-13SLX-3126-SM-5S2Q5 15.6
GTEX-WHSE-3026-SM-3P5ZH 15.6
GTEX-T6MN-2626-SM-32PMQ 15.5
GTEX-11GS4-3126-SM-5A5LH 15.3
GTEX-13FLW-1426-SM-5K7YE 15.3
GTEX-13OW6-3026-SM-5J2MI 15.1
GTEX-111FC-3126-SM-5GZZ2 15.0
GTEX-13O3Q-2926-SM-5KM45 15.0
GTEX-144GL-3026-SM-5Q5CW 15.0
GTEX-OXRN-2426-SM-2I5EQ 15.0
GTEX-YJ89-3026-SM-5IFJI 14.6
GTEX-13PL6-3126-SM-5LUAR 14.5
GTEX-13NYB-3026-SM-5IJD7 14.3
GTEX-14BMV-3026-SM-5S2PQ 14.3
GTEX-RNOR-2326-SM-2TF4I 14.3
GTEX-X4XX-3026-SM-3NMB2 14.2
GTEX-Y8DK-0826-SM-4TT3T 13.9
GTEX-13FHP-3026-SM-5IJBS 13.8
GTEX-11ZUS-2926-SM-5FQSL 13.7
GTEX-13O3O-3126-SM-5KM3H 13.7
GTEX-11NUK-2926-SM-5A5MD 13.3
GTEX-ZUA1-3026-SM-59HJC 13.2
GTEX-XOTO-3026-SM-4B65M 13.1
GTEX-T5JC-2426-SM-3NMDB 13.0
GTEX-145MH-3026-SM-5Q5DZ 12.8
GTEX-147GR-3026-SM-5S2ML 12.8
GTEX-13X6J-3026-SM-5Q5CU 12.7
GTEX-ZYFD-3026-SM-5E44C 12.6
GTEX-13G51-3026-SM-5IJB8 12.5
GTEX-12WSH-3026-SM-5CVNI 12.4
GTEX-131YS-3126-SM-5KLYT 12.4
GTEX-131XW-3126-SM-5LZUC 12.2
GTEX-QDT8-2926-SM-32PKC 12.2
GTEX-WWYW-3126-SM-3NB39 12.2
GTEX-13OVH-3026-SM-5MR4N 12.1
GTEX-1313W-3126-SM-5LZUI 11.8
GTEX-QMR6-1426-SM-32PLA 11.7
GTEX-11NV4-2126-SM-5N9DS 11.6
GTEX-Z93S-2926-SM-57WB9 10.9
GTEX-T2IS-3026-SM-32QPM 10.5
GTEX-WVLH-3026-SM-3MJG9 10.4
GTEX-TSE9-3026-SM-3DB76 10.3
GTEX-PVOW-2526-SM-2XCF7 9.5
GTEX-UTHO-3026-SM-3GAFB 8.8
Show all
8.910.916.44.827.201020304050607080
 
8.910.916.44.827.201020304050607080

Brain - Frontal Cortex (BA9)

Brain - Frontal Cortex (BA9)
RPKM: 14.1
Samples: 108

Max RPKM: 84.7
Min RPKM: 4.8
Std RPKM: 9.7
Median RPKM: 10.8
GTEX-11ZUS-0011-R10b-SM-5BC79 84.7
GTEX-13N2G-0011-R10a-SM-5MR34 46.2
GTEX-13OVJ-0011-R10b-SM-5L3HT 43.7
GTEX-NPJ8-0011-R10A-SM-2YUMO 30.3
GTEX-XLM4-0011-R10A-SM-4AT5P 28.5
GTEX-QVUS-0011-R10A-SM-3GIK3 27.2
GTEX-X261-0011-R10B-SM-4E3JT 26.0
GTEX-N7MT-0011-R10A-SM-2I3E1 25.8
GTEX-13QJC-0011-R10a-SM-5SI63 24.8
GTEX-13JVG-0011-R10b-SM-5KM2P 24.1
GTEX-132Q8-0011-R10b-SM-5DUWZ 23.9
GTEX-NL4W-0011-R10A-SM-2I3DY 23.4
GTEX-X4EP-0011-R10B-SM-4QASJ 22.8
GTEX-ZF28-0011-R10a-SM-4WWEH 22.4
GTEX-XMD1-0011-R10A-SM-4AT4A 20.8
GTEX-X585-0011-R10A-SM-46MUY 20.2
GTEX-13NYS-0011-R10a-SM-5MR4S 18.9
GTEX-QVJO-0011-R10A-SM-2S1QJ 18.9
GTEX-NPJ7-0011-R10A-SM-2I3E5 18.6
GTEX-13X6K-0011-R10a-SM-5P9JR 18.5
GTEX-13OW8-0011-R10a-SM-5L3H6 18.4
GTEX-T5JC-0011-R10A-SM-32PM2 18.0
GTEX-13JUV-0011-R10b-SM-5LZXR 17.8
GTEX-11GSP-0011-R10a-SM-5NQ7J 17.5
GTEX-13FLV-0011-R10b-SM-5LZZ2 17.1
GTEX-13FHO-0011-R10b-SM-5J2MM 16.9
GTEX-131XH-0011-R10a-SM-5EGLJ 16.5
GTEX-14BIL-0011-R10a-SM-5SI75 16.4
GTEX-1445S-0011-R10a-SM-5PNWB 15.9
GTEX-ZAB4-0011-R10a-SM-4SOKH 15.7
GTEX-1477Z-0011-R10b-SM-5S2RF 15.5
GTEX-13FTZ-0011-R10b-SM-5KLZS 15.1
GTEX-ZE7O-0011-R10a-SM-57WAZ 14.5
GTEX-ZV68-0011-R10a-SM-51MT7 14.5
GTEX-13SLW-0011-R10a-SM-5S2UI 14.1
GTEX-11H98-0011-R10b-SM-5NQ98 14.0
GTEX-11WQK-0011-R10a-SM-5BC6R 13.1
GTEX-13IVO-0011-R10a-SM-5LZY3 13.1
GTEX-N7MS-0011-R10A-SM-2HMJK 13.0
GTEX-12WSF-0011-R10a-SM-5LZVH 12.7
GTEX-12ZZX-0011-R10b-SM-5DUWK 12.6
GTEX-14753-0011-R10b-SM-5S2WE 12.5
GTEX-13N1W-0011-R10b-SM-5MR4H 12.4
GTEX-12ZZW-0011-R10b-SM-5HL9X 12.2
GTEX-13X6I-0011-R10a-SM-5PNWI 12.2
GTEX-Q2AG-0011-R10A-SM-2HMLA 12.1
GTEX-13OW6-0011-R10a-SM-5L3HE 11.8
GTEX-12WSH-0011-R10a-SM-5LZUS 11.3
GTEX-12WSA-0011-R10b-SM-5P9ET 11.2
GTEX-11WQC-0011-R10a-SM-57WCT 11.1
GTEX-12WSM-0011-R10a-SM-5DUWV 11.1
GTEX-145LS-0011-R10a-SM-5PNUQ 11.1
GTEX-131YS-0011-R10b-SM-5EQ5N 11.0
GTEX-13OW7-0011-R10a-SM-5L3H3 10.9
GTEX-147F4-0011-R10b-SM-5S2WC 10.8
GTEX-YFC4-0011-R10a-SM-4SOK5 10.8
GTEX-13NYB-0011-R10a-SM-5KM43 10.7
GTEX-13OVL-0011-R10a-SM-5L3GS 10.7
GTEX-ZDXO-0011-R10a-SM-4WWD8 10.7
GTEX-WWYW-0011-R10A-SM-3NB35 10.5
GTEX-13QIC-0011-R10a-SM-5O9C7 10.4
GTEX-X4XX-0011-R10B-SM-46MWO 10.3
GTEX-OXRN-0011-R10A-SM-2I5GC 10.2
GTEX-WZTO-0011-R10B-SM-4E3KB 10.1
GTEX-ZVT3-0011-R10b-SM-57WB6 10.1
GTEX-13G51-0011-R10b-SM-5LZYF 9.9
GTEX-WVLH-0011-R10A-SM-3MJFM 9.9
GTEX-Y8DK-0011-R10A-SM-4SOK1 9.9
GTEX-ZXG5-0011-R10a-SM-57WDD 9.9
GTEX-13NZA-0011-R10b-SM-5KM54 9.8
GTEX-ZUA1-0011-R10a-SM-51MT6 9.7
GTEX-13SLX-0011-R10a-SM-5P9HV 9.6
GTEX-YJ89-0011-R10a-SM-4SOK9 9.6
GTEX-TSE9-0011-R10A-SM-3DB7O 9.4
GTEX-13S7M-0011-R10b-SM-5PNZB 9.3
GTEX-WL46-0011-R10A-SM-3MJFQ 9.3
GTEX-12ZZZ-0011-R10a-SM-5P9HC 9.2
GTEX-145LU-0011-R10a-SM-5PNWJ 9.2
GTEX-ZVZQ-0011-R10b-SM-51MRT 9.1
GTEX-Z93S-0011-R10a-SM-4RGNM 9.0
GTEX-13CZV-0011-R10b-SM-5LZYD 8.9
GTEX-13O3Q-0011-R10b-SM-5KM39 8.9
GTEX-131XW-0011-R10a-SM-5DUVA 8.7
GTEX-13O3O-0011-R10a-SM-5LUA9 8.6
GTEX-13RTJ-0011-R10b-SM-5O9CW 8.6
GTEX-P44H-0011-R10A-SM-2XCEK 8.6
GTEX-13FLW-0011-R10b-SM-5LZZF 8.5
GTEX-13FXS-0011-R10a-SM-5J2MA 8.5
GTEX-145MH-0011-R10b-SM-5PNUK 8.5
GTEX-147GR-0011-R10b-SM-5S2UM 8.5
GTEX-S7SE-0011-R10A-SM-2XCDF 8.5
GTEX-QDT8-0011-R10A-SM-32PKG 8.4
GTEX-T6MN-0011-R10A-SM-32QP7 8.3
GTEX-14ASI-0011-R10b-SM-5S2VZ 8.2
GTEX-NL3H-0011-R10A-SM-2I3E9 8.2
GTEX-1313W-0011-R10b-SM-5DUXA 8.0
GTEX-QMR6-0011-R10A-SM-32PKO 8.0
GTEX-OXRO-0011-R10A-SM-2I5EH 7.8
GTEX-12126-0011-R10b-SM-5BC6T 7.5
GTEX-12WSC-0011-R10a-SM-5GU57 7.4
GTEX-14BIN-0011-R10a-SM-5S2UA 7.3
GTEX-RVPU-0011-R10A-SM-2XCAH 7.3
GTEX-145MG-0011-R10a-SM-5PNWG 7.1
GTEX-139TS-0011-R10a-SM-5K7TU 6.3
GTEX-12WSE-0011-R10b-SM-5P9JV 6.0
GTEX-13X6J-0011-R10b-SM-5PNWA 5.6
GTEX-12WSD-0011-R10b-SM-5GU79 5.4
GTEX-12ZZY-0011-R10b-SM-5HL7W 4.8
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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