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TISSUE ATLAS PRIMARY DATA CAUDATE
MOUSE BRAIN

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:13.9RPKM
FANTOM5:63.2Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:High
 

Antibody staining

Antibody HPA002954

 

Glial cells

Not detected  

Neuronal cells

High  
 
 
 

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

13.9

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 13.9
Samples: 117

Max RPKM: 30.5
Min RPKM: 7.2
Std RPKM: 3.7
Median RPKM: 13.1
GTEX-T2IS-0011-R5A-SM-32QP4 30.5
GTEX-PVOW-0011-R5A-SM-32PL7 24.7
GTEX-12WSA-0011-R5b-SM-5GU5I 24.3
GTEX-139TT-0011-R5b-SM-5K7W8 24.3
GTEX-X4XX-0011-R5A-SM-46MWN 21.9
GTEX-QMR6-0011-R5A-SM-32PKT 21.7
GTEX-P44H-0011-R5A-SM-2XCEX 21.1
GTEX-QVJO-0011-R5A-SM-2S1QM 20.3
GTEX-Z93S-0011-R5b-SM-4RGNI 20.3
GTEX-12WSB-0011-R5b-SM-5GU67 19.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 18.9
GTEX-11WQC-0011-R5a-SM-5BC74 18.8
GTEX-N7MS-0011-R5a-SM-2HMK8 17.9
GTEX-T6MN-0011-R5A-SM-32QPD 17.6
GTEX-13FHP-0011-R5b-SM-5LZY2 17.5
GTEX-WWYW-0011-R5A-SM-3NB3E 17.4
GTEX-13JUV-0011-R5a-SM-5LZY5 17.2
GTEX-WL46-0011-R5A-SM-3LK6V 17.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 17.2
GTEX-R55E-0011-R5A-SM-2TC5N 17.1
GTEX-UTHO-0011-R5A-SM-3GIJD 17.1
GTEX-131YS-0011-R5b-SM-5K7YB 16.9
GTEX-YJ89-0011-R5a-SM-4V6GM 16.0
GTEX-WVLH-0011-R5A-SM-3MJFW 15.9
GTEX-11UD1-0011-R5b-SM-5P9FP 15.8
GTEX-N7MT-0011-R5a-SM-2I3G6 15.7
GTEX-OHPN-0011-R5A-SM-2I5FF 15.7
GTEX-144GO-0011-R5a-SM-5PNUR 15.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 15.4
GTEX-1313W-0011-R5b-SM-5L3EP 15.3
GTEX-13X6I-0011-R5a-SM-5PNWW 15.3
GTEX-X585-0011-R5A-SM-46MVI 15.1
GTEX-NPJ7-0011-R5a-SM-33HBK 15.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 14.9
GTEX-YFC4-0011-R5a-SM-4RGLR 14.9
GTEX-11OF3-0011-R5a-SM-57WB4 14.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 14.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 14.4
GTEX-145LS-0011-R5a-SM-5SI65 14.3
GTEX-S7SE-0011-R5A-SM-2XCDA 14.3
GTEX-ZXG5-0011-R5b-SM-57WBN 14.3
GTEX-12WSC-0011-R5b-SM-5CVNS 14.2
GTEX-11NV4-0011-R5a-SM-5NQ88 14.1
GTEX-12WSD-0011-R5b-SM-5CVNG 14.1
GTEX-13O3O-0011-R5b-SM-5KM44 14.1
GTEX-11H98-0011-R5b-SM-57WCF 14.0
GTEX-RU72-0011-R5A-SM-2TF6U 14.0
GTEX-1399T-0011-R5b-SM-5IJDK 13.9
GTEX-WZTO-0011-R5B-SM-3NMC5 13.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 13.8
GTEX-14ABY-0011-R5b-SM-5SI7B 13.7
GTEX-NL4W-0011-R5a-SM-2I3GD 13.7
GTEX-ZUA1-0011-R5b-SM-51MTG 13.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 13.5
GTEX-14BIM-0011-R5b-SM-5S2RM 13.4
GTEX-XMD1-0011-R5A-SM-4AT47 13.4
GTEX-13FLW-0011-R5a-SM-5LZX6 13.3
GTEX-S7PM-0011-R5A-SM-3NM8G 13.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 13.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 13.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 13.0
GTEX-ZE7O-0011-R5a-SM-57WBO 13.0
GTEX-13OW5-0011-R5b-SM-5L3FR 12.9
GTEX-RVPU-0011-R5A-SM-2XCAD 12.9
GTEX-13G51-0011-R5a-SM-5L3EB 12.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 12.8
GTEX-145MH-0011-R5a-SM-5P9JT 12.7
GTEX-X261-0011-R5A-SM-3NMB4 12.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 12.6
GTEX-13X6J-0011-R5b-SM-5PNWT 12.5
GTEX-T5JC-0011-R5A-SM-32PLK 12.4
GTEX-WHSE-0011-R5A-SM-3P5ZO 12.3
GTEX-13CF2-0011-R5a-SM-5LZWS 12.2
GTEX-13FXS-0011-R5b-SM-5LZYE 12.2
GTEX-13JVG-0011-R5a-SM-5MR4O 12.2
GTEX-13OW6-0011-R5a-SM-5O9BK 12.2
GTEX-12WSH-0011-R5b-SM-5P9F3 12.1
GTEX-132Q8-0011-R5a-SM-5IJDM 12.1
GTEX-NL3H-0011-R5a-SM-2I3GB 12.1
GTEX-ZVT3-0011-R5a-SM-51MSI 12.1
GTEX-1445S-0011-R5a-SM-5PNUS 12.0
GTEX-11GSP-0011-R5a-SM-57WBE 11.9
GTEX-13FLV-0011-R5a-SM-5LZWT 11.7
GTEX-13OW7-0011-R5b-SM-5O9DM 11.7
GTEX-13S7M-0011-R5b-SM-5P9HS 11.7
GTEX-14BIN-0011-R5b-SM-5SI78 11.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 11.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 11.7
GTEX-13CZV-0011-R5a-SM-5K7XA 11.5
GTEX-OXRN-0011-R5A-SM-2I5EF 11.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 11.3
GTEX-13NYB-0011-R5a-SM-5MR45 11.1
GTEX-13NYS-0011-R5a-SM-5MR4D 11.1
GTEX-144GL-0011-R5b-SM-5PNUJ 11.1
GTEX-ZV68-0011-R5a-SM-4YCDW 11.0
GTEX-13SLX-0011-R5a-SM-5O9BV 10.9
GTEX-13X6K-0011-R5b-SM-5PNUE 10.9
GTEX-RVPV-0011-R5A-SM-2TF69 10.9
GTEX-12ZZX-0011-R5a-SM-5HL89 10.8
GTEX-139TS-0011-R5b-SM-5J2MZ 10.8
GTEX-12WSF-0011-R5a-SM-5HL8K 10.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 10.7
GTEX-13OVL-0011-R5b-SM-5L3FU 10.6
GTEX-XOTO-0011-R5A-SM-4B657 10.4
GTEX-13VXU-0011-R5a-SM-5O9D7 10.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 10.2
GTEX-13OVH-0011-R5b-SM-5KM4L 10.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 9.7
GTEX-145MG-0011-R5b-SM-5S2VU 9.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 9.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 9.2
GTEX-13112-0011-R5b-SM-5DUV8 9.0
GTEX-13CIG-0011-R5b-SM-5L3F2 9.0
GTEX-TSE9-0011-R5A-SM-3DB7J 9.0
GTEX-1477Z-0011-R5b-SM-5PNUO 8.5
GTEX-139T8-0011-R5b-SM-5J1MO 8.2
GTEX-13NZA-0011-R5b-SM-5KM4K 7.2
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

63.2

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 63.2
FF:10164-103B2 76 years, female 74.4
FF:10379-105H1 89 years, female 51.9

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