Tissue expression of FAM49A - Summary - The Human Protein Atlas

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FAM49A

TISSUE

CELL

CANCER

TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation

Dictionary


Tissue proteome

GENERAL INFORMATION
Gene name	FAM49A
Gene description	Family with sequence similarity 49, member A
Protein class	Predicted intracellular proteins
Predicted localization	Intracellular
Number of transcripts	4
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HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:	Tissue enhanced (cerebral cortex)
GTEx:	Expressed in all
FANTOM5:	Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Ubiquitous cytoplasmic expression.

DATA RELIABILITY
Data reliability description	Antibody staining mainly not consistent with RNA expression data.
Reliability score	Approved based on 1 antibody. CAB017847
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RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM)

Protein expression (score)

Brain

Cerebral cortex

Hippocampus

N/A

Caudate

N/A

Cerebellum

N/A

Endocrine tissues

Thyroid gland

Parathyroid gland

Adrenal gland

Bone marrow & immune system

Appendix

Bone marrow

Lymph node

Tonsil

Spleen

Muscle tissues

Heart muscle

Skeletal muscle

Smooth muscle

Lung

Nasopharynx

N/A

Bronchus

N/A

Lung

Liver & gallbladder

Liver

Gallbladder

Pancreas

Pancreas

Gastrointestinal tract

Oral mucosa

N/A

Salivary gland

Esophagus

Stomach

Duodenum

Small intestine

Colon

Rectum

Kidney & urinary bladder

Kidney

Urinary bladder

Male tissues

Testis

Epididymis

Prostate

Seminal vesicle

Female tissues

Breast

Vagina

N/A

Cervix, uterine

Endometrium

Fallopian tube

Ovary

Placenta

Adipose & soft tissue

Adipose tissue

Soft tissue

N/A

Skin

Skin

Cerebral cortex

PROTEIN EXPRESSION OVERVIEW
Organ Expression Alphabetical

RNA EXPRESSION OVERVIEW
HPA dataset Organ Expression Alphabetical RNA tissue category: Tissue enhanced (cerebral cortex)
GTEx dataset Organ Expression Alphabetical RNA tissue category: Expressed in all
FANTOM5 dataset Organ Expression Alphabetical RNA tissue category: Expressed in all

GENE INFORMATION
Gene name	FAM49A (HGNC Symbol)
Synonyms	DKFZP566A1524, FLJ11080
Description	Family with sequence similarity 49, member A (HGNC Symbol)
Entrez gene summary
Chromosome	2
Cytoband	p24.2
Chromosome location (bp)	16549459 - 16666331
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000197872 (version 83.38)
Entrez gene	81553
UniProt	Q9H0Q0 (UniProt - Evidence at transcript level)
neXtProt	NX_Q9H0Q0
Antibodypedia	FAM49A antibodies

PROTEIN BROWSER

FAM49A-001	FAM49A-002	FAM49A-003	FAM49A-004

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
FAM49A-001 ENSP00000370724 ENST00000381323	Q9H0Q0 [Direct mapping] Protein FAM49A Show all	MEMSAT3 predicted membrane proteins THUMBUP predicted membrane proteins Predicted intracellular proteins Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014) Show all	GO:0005622 [intracellular] Show all	323 aa 37.3 kDa	No	0
FAM49A-002 ENSP00000384771 ENST00000406434	Q9H0Q0 [Direct mapping] Protein FAM49A Show all	MEMSAT3 predicted membrane proteins THUMBUP predicted membrane proteins Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all	GO:0005622 [intracellular] Show all	323 aa 37.3 kDa	No	0
FAM49A-003 ENSP00000392154 ENST00000445605	C9IYV6 [Direct mapping] Protein FAM49A Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		94 aa 10.9 kDa	No	0
FAM49A-004 ENSP00000388979 ENST00000451689	C9JPE5 [Direct mapping] Protein FAM49A Show all	Predicted intracellular proteins Protein evidence (Ezkurdia et al 2014) Show all		87 aa 9.9 kDa	No	0

Contact

contact@proteinatlas.org

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.