We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
S100A6
  • premium

    TISSUE

  • premium

    CELL

  • CANCER

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expression

h
m
l
n

RNA expression

GTEx:79.4RPKM
FANTOM5:27.6Tags Per Million

CAUDATE - Annotated protein expression

Annotated protein
expression

Glial cells:Not detected
Neuronal cells:Low
 

Antibody staining

Antibody HPA007575

 

Antibody CAB002601

 

Antibody CAB040549

 

Glial cells

Not detected   Medium   Not detected  

Neuronal cells

Low   Medium   Low  
     
     
     

CAUDATE - HPA RNA-seq

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seq

Average RPKM

79.4

GTEx sample id

RPKM

 

Brain - Caudate (basal ganglia)

Brain - Caudate (basal ganglia)
RPKM: 79.4
Samples: 117

Max RPKM: 302
Min RPKM: 21.5
Std RPKM: 44.4
Median RPKM: 66.6
GTEX-132Q8-0011-R5a-SM-5IJDM 302.0
GTEX-OHPN-0011-R5A-SM-2I5FF 274.3
GTEX-13JUV-0011-R5a-SM-5LZY5 228.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 223.9
GTEX-12WSA-0011-R5b-SM-5GU5I 189.8
GTEX-13NYS-0011-R5a-SM-5MR4D 154.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 140.8
GTEX-NPJ8-0011-R5a-SM-2HMJY 139.4
GTEX-12WSB-0011-R5b-SM-5GU67 134.6
GTEX-X4XX-0011-R5A-SM-46MWN 132.8
GTEX-139T8-0011-R5b-SM-5J1MO 132.5
GTEX-X585-0011-R5A-SM-46MVI 128.1
GTEX-139TT-0011-R5b-SM-5K7W8 125.2
GTEX-X261-0011-R5A-SM-3NMB4 123.5
GTEX-12WSF-0011-R5a-SM-5HL8K 117.3
GTEX-144GO-0011-R5a-SM-5PNUR 115.3
GTEX-13X6I-0011-R5a-SM-5PNWW 114.2
GTEX-13JVG-0011-R5a-SM-5MR4O 112.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 110.1
GTEX-NPJ7-0011-R5a-SM-33HBK 108.1
GTEX-RVPV-0011-R5A-SM-2TF69 108.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 108.0
GTEX-XMD1-0011-R5A-SM-4AT47 102.8
GTEX-13X6K-0011-R5b-SM-5PNUE 102.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 94.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 92.9
GTEX-11H98-0011-R5b-SM-57WCF 92.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 89.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 88.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 87.5
GTEX-N7MT-0011-R5a-SM-2I3G6 86.7
GTEX-13OW5-0011-R5b-SM-5L3FR 86.1
GTEX-13CIG-0011-R5b-SM-5L3F2 84.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 83.8
GTEX-WWYW-0011-R5A-SM-3NB3E 83.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 83.4
GTEX-1399T-0011-R5b-SM-5IJDK 81.1
GTEX-1477Z-0011-R5b-SM-5PNUO 80.9
GTEX-ZUA1-0011-R5b-SM-51MTG 79.5
GTEX-1445S-0011-R5a-SM-5PNUS 78.1
GTEX-ZV68-0011-R5a-SM-4YCDW 77.4
GTEX-11GSP-0011-R5a-SM-57WBE 77.2
GTEX-ZVT3-0011-R5a-SM-51MSI 76.5
GTEX-P44H-0011-R5A-SM-2XCEX 76.3
GTEX-NL4W-0011-R5a-SM-2I3GD 73.7
GTEX-ZE7O-0011-R5a-SM-57WBO 73.6
GTEX-12ZZX-0011-R5a-SM-5HL89 73.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 72.3
GTEX-13NYB-0011-R5a-SM-5MR45 71.8
GTEX-NL3H-0011-R5a-SM-2I3GB 71.4
GTEX-13FLV-0011-R5a-SM-5LZWT 70.9
GTEX-14BIM-0011-R5b-SM-5S2RM 70.5
GTEX-QMR6-0011-R5A-SM-32PKT 69.8
GTEX-TSE9-0011-R5A-SM-3DB7J 69.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 69.4
GTEX-13CZV-0011-R5a-SM-5K7XA 68.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 68.0
GTEX-12WSC-0011-R5b-SM-5CVNS 67.9
GTEX-T6MN-0011-R5A-SM-32QPD 66.6
GTEX-12WSH-0011-R5b-SM-5P9F3 65.6
GTEX-13OW6-0011-R5a-SM-5O9BK 64.8
GTEX-RU72-0011-R5A-SM-2TF6U 64.6
GTEX-OXRN-0011-R5A-SM-2I5EF 64.3
GTEX-T5JC-0011-R5A-SM-32PLK 62.8
GTEX-13OVH-0011-R5b-SM-5KM4L 62.7
GTEX-XOTO-0011-R5A-SM-4B657 62.0
GTEX-WL46-0011-R5A-SM-3LK6V 61.7
GTEX-13CF2-0011-R5a-SM-5LZWS 61.6
GTEX-ZXG5-0011-R5b-SM-57WBN 61.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 60.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 59.8
GTEX-11WQC-0011-R5a-SM-5BC74 59.4
GTEX-13S7M-0011-R5b-SM-5P9HS 59.2
GTEX-139TS-0011-R5b-SM-5J2MZ 59.1
GTEX-13G51-0011-R5a-SM-5L3EB 58.9
GTEX-RVPU-0011-R5A-SM-2XCAD 58.8
GTEX-11OF3-0011-R5a-SM-57WB4 58.5
GTEX-N7MS-0011-R5a-SM-2HMK8 58.1
GTEX-13OW7-0011-R5b-SM-5O9DM 57.6
GTEX-S7PM-0011-R5A-SM-3NM8G 57.2
GTEX-14ABY-0011-R5b-SM-5SI7B 56.9
GTEX-UTHO-0011-R5A-SM-3GIJD 55.8
GTEX-S7SE-0011-R5A-SM-2XCDA 55.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 54.7
GTEX-145MG-0011-R5b-SM-5S2VU 53.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 52.9
GTEX-13VXU-0011-R5a-SM-5O9D7 52.8
GTEX-1313W-0011-R5b-SM-5L3EP 52.0
GTEX-QVJO-0011-R5A-SM-2S1QM 51.7
GTEX-WVLH-0011-R5A-SM-3MJFW 50.4
GTEX-13FLW-0011-R5a-SM-5LZX6 50.2
GTEX-13NZA-0011-R5b-SM-5KM4K 50.1
GTEX-YFC4-0011-R5a-SM-4RGLR 49.7
GTEX-13OVL-0011-R5b-SM-5L3FU 48.8
GTEX-12WSD-0011-R5b-SM-5CVNG 48.1
GTEX-Z93S-0011-R5b-SM-4RGNI 48.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 47.1
GTEX-11UD1-0011-R5b-SM-5P9FP 46.9
GTEX-11NV4-0011-R5a-SM-5NQ88 46.8
GTEX-131YS-0011-R5b-SM-5K7YB 46.8
GTEX-13112-0011-R5b-SM-5DUV8 46.2
GTEX-145MH-0011-R5a-SM-5P9JT 45.9
GTEX-145LS-0011-R5a-SM-5SI65 45.2
GTEX-144GL-0011-R5b-SM-5PNUJ 44.5
GTEX-13SLX-0011-R5a-SM-5O9BV 42.3
GTEX-13X6J-0011-R5b-SM-5PNWT 42.1
GTEX-WZTO-0011-R5B-SM-3NMC5 41.9
GTEX-13FXS-0011-R5b-SM-5LZYE 41.7
GTEX-13O3O-0011-R5b-SM-5KM44 37.4
GTEX-14BIN-0011-R5b-SM-5SI78 37.1
GTEX-R55E-0011-R5A-SM-2TC5N 35.6
GTEX-13FHP-0011-R5b-SM-5LZY2 33.1
GTEX-PVOW-0011-R5A-SM-32PL7 31.4
GTEX-T2IS-0011-R5A-SM-32QP4 21.5
Show all

CAUDATE - FANTOM5 CAGE

Average Tags Per Million

27.6

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 27.6
FF:10164-103B2 76 years, female 33.9
FF:10379-105H1 89 years, female 21.3

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.