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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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DDX47
  • TISSUE

  • premium

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TISSUE ATLAS PRIMARY DATA

GENE/PROTEIN

Antibody validation


Dictionary


Tissue proteome

GENERAL INFORMATION

Gene name

DDX47

Gene description

DEAD (Asp-Glu-Ala-Asp) box polypeptide 47

Protein class

Enzymes
Plasma proteins
Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

3
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category

HPA:Expressed in all
GTEx:Mixed
FANTOM5:Expressed in all

Protein evidence

Evidence at protein level

Protein expression

Nucleolar expression in several tissues.

DATA RELIABILITY

Data reliability
description

Antibody staining mainly consistent with RNA expression data.

Reliability score

Approved based on 1 antibody.
HPA014855
SHOW MORE

RNA AND PROTEIN EXPRESSION SUMMARY

RNA expression (TPM) Protein expression (score)
Brain
Cerebral cortex
Hippocampus
N/A
Caudate
N/A
Cerebellum
N/A
Endocrine tissues
Thyroid gland
Parathyroid gland
Adrenal gland
Bone marrow & immune system
Appendix
Bone marrow
Lymph node
Tonsil
Spleen
Muscle tissues
Heart muscle
Skeletal muscle
Smooth muscle
Lung
Nasopharynx
N/A
Bronchus
N/A
Lung
Liver & gallbladder
Liver
Gallbladder
Pancreas
Pancreas
Gastrointestinal tract
Oral mucosa
N/A
Salivary gland
Esophagus
Stomach
Duodenum
Small intestine
Colon
Rectum
Kidney & urinary bladder
Kidney
Urinary bladder
Male tissues
Testis
Epididymis
Prostate
Seminal vesicle
Female tissues
Breast
Vagina
N/A
Cervix, uterine
Endometrium
Fallopian tube
Ovary
Placenta
Adipose & soft tissue
Adipose tissue
Soft tissue
N/A
Skin
Skin
Cerebral cortex

Lymph node

Liver

Esophagus

Colon

Kidney

Testis

PROTEIN EXPRESSION OVERVIEW

Organ
Expression
Alphabetical

RNA EXPRESSION OVERVIEW

HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Mixed
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all

GENE INFORMATION

Gene name

DDX47 (HGNC Symbol)

Synonyms

DKFZp564O176, FLJ30012, HQ0256, RRP3

Description

DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 (HGNC Symbol)

Entrez gene summary

This gene encodes a member of the DEAD box protein family. DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure, such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The protein encoded by this gene can shuttle between the nucleus and the cytoplasm, and has an RNA-independent ATPase activity. Two alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

Chromosome

12

Cytoband

p13.1

Chromosome location (bp)

12813316 - 12829981

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000213782 (version 83.38)

Entrez gene

51202

UniProt

Q9H0S4 (UniProt - Evidence at protein level)

neXtProt

NX_Q9H0S4

Antibodypedia

DDX47 antibodies

PROTEIN BROWSER

DDX47-001
DDX47-002
DDX47-009

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)

DDX47-001
ENSP00000350698
ENST00000358007
Q9H0S4 [Direct mapping]
Probable ATP-dependent RNA helicase DDX47
A0A024RAS3 [Target identity:100%; Query identity:100%]
HCG27698, isoform CRA_a
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted intracellular proteins
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0004004 [ATP-dependent RNA helicase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005730 [nucleolus]
GO:0006364 [rRNA processing]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0008625 [extrinsic apoptotic signaling pathway via death domain receptors]
GO:0010501 [RNA secondary structure unwinding]
GO:0016020 [membrane]
GO:0044822 [poly(A) RNA binding]
Show all
455 aa
50.6 kDa
No 0
DDX47-002
ENSP00000319578
ENST00000352940
Q9H0S4 [Direct mapping]
Probable ATP-dependent RNA helicase DDX47
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted intracellular proteins
Plasma proteins
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0004004 [ATP-dependent RNA helicase activity]
GO:0005515 [protein binding]
GO:0005524 [ATP binding]
GO:0005730 [nucleolus]
GO:0006364 [rRNA processing]
GO:0006397 [mRNA processing]
GO:0008380 [RNA splicing]
GO:0008625 [extrinsic apoptotic signaling pathway via death domain receptors]
GO:0010501 [RNA secondary structure unwinding]
GO:0016020 [membrane]
GO:0044822 [poly(A) RNA binding]
Show all
406 aa
45.2 kDa
No 0
DDX47-009
ENSP00000444000
ENST00000544400
F5H1N9 [Direct mapping]
Probable ATP-dependent RNA helicase DDX47
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0004004 [ATP-dependent RNA helicase activity]
GO:0005524 [ATP binding]
GO:0010501 [RNA secondary structure unwinding]
Show all
196 aa
22 kDa
No 0

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