Expression of SOGA3 in cancer - Summary

CANCER ATLAS

Gene description

SOGA family member 3

Protein class

Predicted intracellular proteins, Predicted membrane proteins

Protein evidence

Evidence at protein level

Colorectal cancer

Breast cancer

Prostate cancer

Lung cancer

Glioma

STAINING SUMMARY

HPA035388	HPA035389

Tissue	Cancer staining
Breast cancer
Carcinoid
Cervical cancer
Colorectal cancer
Endometrial cancer
Glioma
Head and neck cancer
Liver cancer
Lung cancer
Lymphoma

Tissue	Cancer staining
Melanoma
Ovarian cancer
Pancreatic cancer
Prostate cancer
Renal cancer
Skin cancer
Stomach cancer
Testis cancer
Thyroid cancer
Urothelial cancer

Staining summary	Moderate to strong cytoplasmic and membranous often accompanied by nucleolar and/or nuclear membranous positivity was observed in cancer tissues.

GENE INFORMATION
Gene name	SOGA3 (HGNC Symbol)
Synonyms	C6orf174, dJ403A15.3
Description	SOGA family member 3 (HGNC Symbol)
Entrez gene summary
Chromosome	6
Cytoband	q22.33
Chromosome location (bp)	127472794 - 127519191
Protein evidence	Evidence at protein level (all genes)
Ensembl	ENSG00000214338 (version 83.38)
Entrez gene	387104
UniProt	Q5TF21 (UniProt - Inferred from homology)
neXtProt	NX_Q5TF21
Antibodypedia	SOGA3 antibodies

PROTEIN BROWSER

SOGA3-001	SOGA3-002	SOGA3-003

PROTEIN INFORMATION
Splice variant	UniProt	Protein class	Gene ontology	Length & mass	Signal peptide (predicted)	Transmembrane regions (predicted)
SOGA3-001 ENSP00000434570 ENST00000525778	Q5TF21 [Direct mapping] Protein SOGA3 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Protein evidence (Kim et al 2014) Show all	GO:0005615 [extracellular space] GO:0010506 [regulation of autophagy] GO:0016021 [integral component of membrane] Show all	947 aa 103.2 kDa	No	1
SOGA3-002 ENSP00000431662 ENST00000467753		Predicted intracellular proteins Show all		10 aa 0.9 kDa	No	0
SOGA3-003 ENSP00000435559 ENST00000465909	E9PJP2 [Direct mapping] Protein SOGA3 Show all	Predicted membrane proteins Prediction method-based Membrane proteins predicted by MDM MEMSAT3 predicted membrane proteins MEMSAT-SVM predicted membrane proteins Phobius predicted membrane proteins SCAMPI predicted membrane proteins SPOCTOPUS predicted membrane proteins THUMBUP predicted membrane proteins TMHMM predicted membrane proteins # TM segments-based 1TM proteins predicted by MDM Show all	GO:0005615 [extracellular space] GO:0010506 [regulation of autophagy] GO:0016021 [integral component of membrane] Show all	944 aa 102.9 kDa	No	1