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ZBED1

GENERAL INFORMATION

Gene name

 ZBED1

Gene description

 Zinc finger, BED-type containing 1

Protein class

 Predicted intracellular proteins
Transcription factors

Predicted localization

 Intracellular

Number of transcripts

 4
SHOW MORE

HUMAN PROTEIN ATLAS INFORMATION

RNA tissue category
HPA:Expressed in all
GTEx:Expressed in all
FANTOM5:Mixed

Protein evidence

 Evidence at protein level

DATA RELIABILITY

Reliability score

 Pending normal tissue annotation.

RNA AND PROTEIN EXPRESSION SUMMARY
RNA expression (TPM) Protein expression (score)
Brain
N/A
Hippocampus
N/A
N/A
Caudate
N/A
N/A
Cerebellum
N/A
N/A
Endocrine tissues
N/A
Bone marrow & immune system
N/A
Appendix
N/A
Tonsil
N/A
Spleen
N/A
Muscle tissues
N/A
Lung
N/A
Nasopharynx
N/A
N/A
Bronchus
N/A
N/A
Lung
N/A
Liver & gallbladder
N/A
Liver
N/A
Pancreas
N/A
Pancreas
N/A
Gastrointestinal tract
N/A
Oral mucosa
N/A
N/A
Esophagus
N/A
Stomach
N/A
Duodenum
N/A
Colon
N/A
Rectum
N/A
Kidney & urinary bladder
N/A
Kidney
N/A
Male tissues
N/A
Testis
N/A
Prostate
N/A
Female tissues
N/A
Breast
N/A
Vagina
N/A
N/A
Ovary
N/A
Placenta
N/A
Adipose & soft tissue
N/A
Soft tissue
N/A
N/A
Skin
N/A
Skin
N/A

PROTEIN EXPRESSION OVERVIEW
Pending normal tissue annotation.

RNA EXPRESSION OVERVIEW
HPA dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
GTEx dataset
Organ
Expression
Alphabetical
RNA tissue category: Expressed in all
FANTOM5 dataset
Organ
Expression
Alphabetical
RNA tissue category: Mixed

GENE INFORMATION

Gene name

 ZBED1 (HGNC Symbol)

Synonyms

 ALTE, DREF, hDREF, KIAA0785, TRAMP

Description

 Zinc finger, BED-type containing 1 (HGNC Symbol)

Entrez gene summary

 This gene is located in the pseudoautosomal region 1 (PAR1) of X and Y chromosomes. It was earlier identified as a gene with similarity to Ac transposable elements, however, was found not to have transposase activity. Later studies show that this gene product is localized in the nucleus and functions as a transcription factor. It binds to DNA elements found in the promoter regions of several genes related to cell proliferation, such as histone H1, hence may have a role in regulating genes related to cell proliferation. Alternatively spliced transcript variants with different 5' untranslated region have been found for this gene. [provided by RefSeq, Jan 2010]

Chromosome

 X

Cytoband

 p22.33

Chromosome location (bp)

 2486414 - 2500967

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000214717 (version 83.38)

Entrez gene

 9189

UniProt

 O96006 (UniProt - Evidence at protein level)

neXtProt

 NX_O96006

Antibodypedia

 ZBED1 antibodies

PROTEIN BROWSER
ZBED1-001
ZBED1-002
ZBED1-003
ZBED1-201

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
ZBED1-001
ENSP00000370620
ENST00000381222
O96006 [Direct mapping]
Zinc finger BED domain-containing protein 1
A0A024RBU4 [Target identity:100%; Query identity:100%]
HCG1981838, isoform CRA_b
Show all
Predicted intracellular proteins
Transcription factors
   Zinc-coordinating DNA-binding domains
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000228 [nuclear chromosome]
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0004803 [transposase activity]
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
GO:0046983 [protein dimerization activity]
Show all
 694 aa
78.2 kDa 		No 0
ZBED1-002
ENSP00000370616
ENST00000381218
O96006 [Direct mapping]
Zinc finger BED domain-containing protein 1
A0A024RBU4 [Target identity:100%; Query identity:100%]
HCG1981838, isoform CRA_b
Show all
Predicted intracellular proteins
Transcription factors
   Zinc-coordinating DNA-binding domains
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000228 [nuclear chromosome]
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0004803 [transposase activity]
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
GO:0046983 [protein dimerization activity]
Show all
 694 aa
78.2 kDa 		No 0
ZBED1-003
ENSP00000419148
ENST00000461691
C9JXP4 [Direct mapping]
Zinc finger BED domain-containing protein 1
Show all
Predicted intracellular proteins
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
Show all
 272 aa
30.5 kDa 		No 0
ZBED1-201
ENSP00000370621
ENST00000381223
O96006 [Direct mapping]
Zinc finger BED domain-containing protein 1
A0A024RBU4 [Target identity:100%; Query identity:100%]
HCG1981838, isoform CRA_b
Show all
Predicted intracellular proteins
Transcription factors
   Zinc-coordinating DNA-binding domains
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000228 [nuclear chromosome]
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0004803 [transposase activity]
GO:0005515 [protein binding]
GO:0046872 [metal ion binding]
GO:0046983 [protein dimerization activity]
Show all
 694 aa
78.2 kDa 		No 0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.