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Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Tissue

Detectable

Cell line

Detectable

Category

Score

Score

Score

Antibodies

Column

 
 
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PAX6
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ANTIBODY INFORMATION VALIDATION SUMMARY IMMUNOCYTOCHEMISTRY IMMUNOHISTOCHEMISTRY WESTERN BLOT PROTEIN ARRAY ANTIGEN INFORMATION RELEVANT PUBLICATIONS

ANTIBODY INFORMATION

 
 

Antibody HPA030775

 

Antibody CAB034143

 

Provider

Atlas Antibodies
Sigma-Aldrich
  Santa Cruz Biotechnology
 

Product name

HPA030775   sc-81649  

Host species

Rabbit   Mouse  

Clonality

pAb   mAb  

Purity

Affinity purified using the PrEST-antigen as affinity ligand   Protein A/G  

Other gene match

   

Released in version

6   6  

References

2    

VALIDATION SUMMARY

 
 

Antibody HPA030775

 

Antibody CAB034143

 
Immunocytochemistry


Validated
   
Immunohistochemistry

Supported   Supported  
Western blot

Uncertain   Uncertain  
Protein array

Supported    

IMMUNOCYTOCHEMISTRY

 
 

Antibody HPA030775

 

Antibody CAB034143

 

Formal validation: Tagged protein

Validated

Antibody staining overlaps with GFP tagged protein
   

   

Figure description

Immunofluorescent staining of transgenic HeLa cells show antibody staining in nucleus but excluded from the nucleoli and GFP expression in nucleus but excluded from the nucleoli.    

Antibody dilution

1:9    
 

Standard validation

Supported    

   

Figure description

Immunofluorescent staining of human cell line HEK 293 shows localization to nucleoplasm.    

Antibody dilution

1:9    

Literature conformity

The subcellular location is supported by literature.    

IMMUNOHISTOCHEMISTRY

 
 

Antibody HPA030775

 

Antibody CAB034143

 

Standard validation

Supported   Supported  

   

Figure description

Immunohistochemical staining of human pancreas shows strong nuclear positivity in islet cells.   Immunohistochemical staining of human pancreas shows strong nuclear positivity in islet cells.  

Expression

RNA: detected in 11 tissues
Protein: detected in 24 cell types
  RNA: detected in 11 tissues
Protein: detected in 21 cell types
 

Retrieval

HIER pH6   HIER pH6  

Antibody dilution

1:10   1:30  

Literature conformity

Consistent with gene/protein characterization data.   Consistent with gene/protein characterization data.  

RNA consistency

No internal RNA expression data available for correlation.   No internal RNA expression data available for correlation.  

WESTERN BLOT

 
 

Antibody HPA030775

 

Antibody CAB034143

 

Standard validation

Uncertain

Analysis performed using a standard panel of samples.
No bands detected.
  Uncertain

Analysis performed using a standard panel of samples.
No bands detected.
 

   

Figure description

Lane 1: Marker [kDa] 230, 130, 95, 72, 56, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
  Lane 1: Marker [kDa] 250, 130, 95, 72, 55, 36, 28, 17, 11
Lane 2: RT4
Lane 3: U-251 MG
Lane 4: Human Plasma
Lane 5: Liver
Lane 6: Tonsil
 

Target mass (kDa)

48.2, 46.7   48.2, 46.7, 13.4, 6.7, 6.1, 4.2, 0.3  

Antibody dilution

1:250   1:500  

PROTEIN ARRAY

 
 

Antibody HPA030775

 

Antibody CAB034143

 

Standard validation

Supported

Pass with single peak corresponding to interaction only with its own antigen.
   

   

Figure description

Antibody specificity analysis with protein arrays. Predicted and matching interactions are shown in green.    

Antibody dilution

1:500    

ANTIGEN INFORMATION

 
 

Antibody HPA030775

 

Antibody CAB034143

 

Antigen

Recombinant protein fragment   Not known  

Length (aa)

113    

Antigen sequence

VSSFTSGSMLGRTDTALTNTYSALPPMPSFTMANNLPMQPPVPSQTSSYS
CMLPTSPSVNGRSYDTYTPPHMQTHMNSQPMGTSGTTSTGLISPGVSVPV
QVPGSEPDMSQYW
   

Matching transcripts

PAX6-001 - ENSP00000368410 [100%]
PAX6-002 - ENSP00000241001 [100%]
PAX6-003 - ENSP00000368418 [100%]
PAX6-004 - ENSP00000368403 [100%]
PAX6-005 - ENSP00000368406 [100%]
PAX6-008 - ENSP00000368427 [100%]
PAX6-009 - ENSP00000368424 [100%]
PAX6-011 - ENSP00000368401 [100%]
PAX6-201 - ENSP00000404100 [100%]
PAX6-202 - ENSP00000480026 [100%]
   

Other gene match

   
ANTIGEN VIEW
PAX6-001
PAX6-002
PAX6-003
PAX6-004
PAX6-005
PAX6-008
PAX6-009
PAX6-011
PAX6-201
PAX6-202

RELEVANT PUBLICATIONS

 
 

Antibody HPA030775

 

Antibody CAB034143

 

1.

Layered hydrogels accelerate iPSC-derived neuronal maturation and reveal migration defects caused by MeCP2 dysfunction
Zhang ZN et al
Proc Natl Acad Sci U S A 2016;113(12):3185-90
   

2.

Partial Conservation between Mice and Humans in Olfactory Bulb Interneuron Transcription Factor Codes
Fujiwara N et al
Front Neurosci 2016;10:337
   
 

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