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COLON - Expression summary

Protein expression
h
m
l
n

RNA expression
HPA:2.3TPM
GTEx:7.1RPKM
FANTOM5:31.8Tags Per Million

COLON - Annotated protein expression

Annotated protein
expression

Endothelial cells:Low
Glandular cells:Low
Peripheral nerve/ganglion:Low
 

Antibody staining

Antibody HPA020637

  

Antibody HPA020728

  

Antibody HPA020734

  

Endothelial cells

 Not detected   Low   Not detected  

Glandular cells

 Medium   Low   Low  

Peripheral nerve/ganglion

 Not detected   Medium   Not detected  
     
     

COLON - HPA RNA-seq

Average TPM

2.3
overview Male, age 54
Sample 1
TPM: 2.0
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
TPM: 1.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
TPM: 1.0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
TPM: 3.0
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
TPM: 1.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
TPM: 3.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
TPM: 2.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78
Sample 8
TPM: 2.9
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84
Sample 9
TPM: 2.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80
Sample 10
TPM: 0.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78
Sample 11
TPM: 3.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69
Sample 12
TPM: 2.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72
Sample 13
TPM: 2.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

7.1

GTEx sample id

RPKM
 

Colon - Sigmoid
Colon - Sigmoid
RPKM: 8.8
Samples: 149

Max RPKM: 30.2
Min RPKM: 3.4
Std RPKM: 4.2
Median RPKM: 7.8
GTEX-14E6C-2226-SM-5QGQG 30.2
GTEX-148VJ-2426-SM-5NQ9Y 26.4
GTEX-117YX-0526-SM-5EGJH 21.7
GTEX-Y9LG-1326-SM-4VBQB 20.5
GTEX-1211K-1826-SM-5EGJ2 19.6
GTEX-11WQK-2526-SM-5CVL8 19.5
GTEX-145ME-1126-SM-5SIAT 16.4
GTEX-WFON-1326-SM-4LVMN 15.5
Show all
 

Colon - Transverse
Colon - Transverse
RPKM: 5.8
Samples: 196

Max RPKM: 25.2
Min RPKM: 0.2
Std RPKM: 4.7
Median RPKM: 4.4
GTEX-11WQK-2126-SM-5EQME 25.2
GTEX-Y114-1526-SM-4TT79 23.7
GTEX-X5EB-0926-SM-46MVT 22.0
GTEX-ZXES-1626-SM-5NQ7L 21.8
GTEX-13OVI-2026-SM-5J1MU 19.2
GTEX-WEY5-1426-SM-4LMJ3 19.1
GTEX-13W3W-2126-SM-5K7UX 18.9
GTEX-13CF3-1426-SM-5K7YY 17.8
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

31.8

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 31.8
FF:10014-101C5 62,83,84 years, mixed 31.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.