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CSDE1

CANCER ATLAS

Gene description

 Cold shock domain containing E1, RNA-binding

Protein class

 Cancer-related genes, Plasma proteins, Predicted intracellular proteins

Protein evidence

 Evidence at protein level
Colorectal cancer
Breast cancer
Prostate cancer
Lung cancer
Liver cancer

STAINING SUMMARY
HPA018846
HPA052221

GENE INFORMATION

Gene name

 CSDE1 (HGNC Symbol)

Synonyms

 D1S155E, UNR

Description

 Cold shock domain containing E1, RNA-binding (HGNC Symbol)

Entrez gene summary

Chromosome

 1

Cytoband

 p13.2

Chromosome location (bp)

 114716913 - 114758676

Protein evidence

 Evidence at protein level (all genes)

Ensembl

 ENSG00000009307 (version 83.38)

Entrez gene

 7812

UniProt

 O75534 (UniProt - Evidence at protein level)

neXtProt

 NX_O75534

Antibodypedia

 CSDE1 antibodies

PROTEIN BROWSER
«
CSDE1-001
CSDE1-002
CSDE1-003
CSDE1-004
CSDE1-007
CSDE1-008
CSDE1-009
CSDE1-010
CSDE1-013
CSDE1-014
CSDE1-015
CSDE1-016
CSDE1-201
»

PROTEIN INFORMATION

Splice variant

UniProt

Protein class

Gene ontology

Length & mass

Signal peptide
(predicted)

Transmembrane regions
(predicted)
CSDE1-001
ENSP00000342408
ENST00000339438
O75534 [Direct mapping]
Cold shock domain-containing protein E1
A0A024R0K2 [Target identity:100%; Query identity:100%]
Cold shock domain containing E1, RNA-binding, isoform CRA_b
Show all
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0008584 [male gonad development]
GO:0044822 [poly(A) RNA binding]
GO:0070937 [CRD-mediated mRNA stability complex]
GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay]
Show all
 767 aa
85.7 kDa 		No 0
CSDE1-002
ENSP00000351329
ENST00000358528
O75534 [Direct mapping]
Cold shock domain-containing protein E1
A0A024R0E2 [Target identity:100%; Query identity:100%]
Cold shock domain containing E1, RNA-binding, isoform CRA_a
Show all
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0008584 [male gonad development]
GO:0044822 [poly(A) RNA binding]
GO:0070937 [CRD-mediated mRNA stability complex]
GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay]
Show all
 798 aa
88.9 kDa 		No 0
CSDE1-003
ENSP00000261443
ENST00000261443
O75534 [Direct mapping]
Cold shock domain-containing protein E1
A0A024R0K2 [Target identity:100%; Query identity:100%]
Cold shock domain containing E1, RNA-binding, isoform CRA_b
Show all
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0008584 [male gonad development]
GO:0044822 [poly(A) RNA binding]
GO:0070937 [CRD-mediated mRNA stability complex]
GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay]
Show all
 767 aa
85.7 kDa 		No 0
CSDE1-004
ENSP00000358543
ENST00000369530
O75534 [Direct mapping]
Cold shock domain-containing protein E1
Show all
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0008584 [male gonad development]
GO:0044822 [poly(A) RNA binding]
GO:0070937 [CRD-mediated mRNA stability complex]
GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay]
Show all
 813 aa
90.6 kDa 		No 0
CSDE1-007
ENSP00000431297
ENST00000530886
E9PLT0 [Direct mapping]
Cold shock domain-containing protein E1
Show all
Predicted intracellular proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006355 [regulation of transcription, DNA-templated]
Show all
 668 aa
74.6 kDa 		No 0
CSDE1-008
ENSP00000407724
ENST00000438362
O75534 [Direct mapping]
Cold shock domain-containing protein E1
Show all
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0008584 [male gonad development]
GO:0044822 [poly(A) RNA binding]
GO:0070937 [CRD-mediated mRNA stability complex]
GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay]
Show all
 844 aa
93.7 kDa 		No 0
CSDE1-009
ENSP00000432958
ENST00000534699
O75534 [Direct mapping]
Cold shock domain-containing protein E1
A0A024R0E2 [Target identity:100%; Query identity:100%]
Cold shock domain containing E1, RNA-binding, isoform CRA_a
Show all
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0008584 [male gonad development]
GO:0044822 [poly(A) RNA binding]
GO:0070937 [CRD-mediated mRNA stability complex]
GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay]
Show all
 798 aa
88.9 kDa 		No 0
CSDE1-010
ENSP00000431562
ENST00000525878
E9PKN4 [Direct mapping]
Cold shock domain-containing protein E1
Show all
Predicted intracellular proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
 46 aa
5.1 kDa 		No 0
CSDE1-013
ENSP00000432805
ENST00000525970
Predicted intracellular proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
 7 aa
0.8 kDa 		No 0
CSDE1-014
ENSP00000437159
ENST00000529046
E9PNG3 [Direct mapping]
Cold shock domain-containing protein E1
Show all
Predicted intracellular proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0006355 [regulation of transcription, DNA-templated]
Show all
 137 aa
15.5 kDa 		No 0
CSDE1-015
ENSP00000431770
ENST00000525132
E9PJK7 [Direct mapping]
Cold shock domain-containing protein E1
Show all
Predicted intracellular proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
 36 aa
4.1 kDa 		No 0
CSDE1-016
ENSP00000435185
ENST00000534389
E9PLD4 [Direct mapping]
Cold shock domain-containing protein E1
Show all
Predicted intracellular proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0006355 [regulation of transcription, DNA-templated]
Show all
 95 aa
10.7 kDa 		No 0
CSDE1-201
ENSP00000481762
ENST00000610726
O75534 [Direct mapping]
Cold shock domain-containing protein E1
Show all
   SPOCTOPUS predicted secreted proteins
Predicted intracellular proteins
Plasma proteins
Cancer-related genes
   Mutational cancer driver genes
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0003676 [nucleic acid binding]
GO:0003677 [DNA binding]
GO:0005515 [protein binding]
GO:0005737 [cytoplasm]
GO:0005743 [mitochondrial inner membrane]
GO:0005794 [Golgi apparatus]
GO:0005886 [plasma membrane]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0008584 [male gonad development]
GO:0044822 [poly(A) RNA binding]
GO:0070937 [CRD-mediated mRNA stability complex]
GO:0070966 [nuclear-transcribed mRNA catabolic process, no-go decay]
Show all
 844 aa
93.7 kDa 		No 0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.